chr6 : 119,023,839 – 119,024,444

605 bp 83 TFs 0 linked genes

This 605 bp open chromatin element has no linked target genes and is bound by 83 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

83 transcription factors

AR 1 dataset

ChIP MCF-7 GSE48930.AR.MCF-7 201 bp overlap

ARGFX 1 dataset

Motif DE_12h DE_12h-ARGFX_MA1463.2 8 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 360 bp overlap

Arx 1 dataset

Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 116 bp overlap

BRD3 2 datasets

ChIP H-1_DE GSE126661.BRD3.H-1_DE 329 bp overlap

ChIP H-1_DE GSE126661.BRD3.H-1_DE 175 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

CHD1 1 dataset

ChIP WA01 ENCSR000AQK.CHD1.WA01 153 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 398 bp overlap

CREB1 1 dataset

Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap

CTCF 2 datasets

ChIP HAP1 GSE152721.CTCF.HAP1 167 bp overlap

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 374 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF680YXW 220 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

Dlx2 1 dataset

Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap

ELK1::HOXA1 1 dataset

Motif DE_12h DE_12h-ELK1HOXA1_MA1931.1 14 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 133 bp overlap

ESR1 1 dataset

ChIP MCF-7_LTED GSE86538.ESR1.MCF-7_LTED 79 bp overlap

ETV2::DRGX 1 dataset

Motif DE_12h DE_12h-ETV2DRGX_MA1940.2 12 bp overlap

ETV5::DRGX 1 dataset

Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap

EZH2 2 datasets

ChIP DND41 ENCSR000ASW.EZH2.DND41 221 bp overlap

ChIP neural progenitor cell ENCFF018MKA 400 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 330 bp overlap

FEZF1 1 dataset

ChIP HEK293 GSE76494.FEZF1.HEK293 204 bp overlap

FLI1::DRGX 1 dataset

Motif DE_12h DE_12h-FLI1DRGX_MA1949.2 14 bp overlap

FOXA2 4 datasets

ChIP DE DE-FOXA2-1 443 bp overlap

ChIP DE DE-FOXA2-2 458 bp overlap

Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 291 bp overlap

FOXA3 1 dataset

Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap

FOXB1 1 dataset

Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap

FOXC1 1 dataset

Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap

FOXC2 1 dataset

Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap

FOXD3 1 dataset

Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap

FOXF2 1 dataset

Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap

FOXI1 1 dataset

Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap

FOXK1 1 dataset

ChIP WTC11 ENCFF875IGU 286 bp overlap

FOXN3 2 datasets

Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap

FOXP1 2 datasets

Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap

ChIP H9 GSE31006.FOXP1.H9 190 bp overlap

FOXP4 2 datasets

Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap

ChIP WTC11 ENCFF708TAF 287 bp overlap

Foxj3 2 datasets

Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap

Foxq1 1 dataset

Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap

GABPA 1 dataset

ChIP VCaP GSE49091.GABPA.VCaP 177 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 198 bp overlap

ChIP DE DE-GATA4-2 322 bp overlap

GATA6 2 datasets

ChIP DE DE-GATA6-1 238 bp overlap

ChIP DE DE-GATA6-2 320 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

GFI1 1 dataset

Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

MLLT3 1 dataset

ChIP THP-1 GSE79899.MLLT3.THP-1 181 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

MYBL2 1 dataset

ChIP A-673 GSE119971.MYBL2.A-673 247 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NANOG 11 datasets

ChIP GM23338 ENCFF065NZG 233 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 167 bp overlap

ChIP H1 ENCFF747ZPQ 196 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 493 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 394 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 196 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 404 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 461 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 378 bp overlap

ChIP hESC GSE20650.NANOG.hESC 164 bp overlap

ChIP hESC GSE18292.NANOG.hESC 101 bp overlap

NR4A1 1 dataset

Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap

NR4A2 1 dataset

Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

ONECUT1 2 datasets

ChIP H9 ERP004206.ONECUT1.H9 134 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 237 bp overlap

POU5F1 2 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 380 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 220 bp overlap

PPARG 1 dataset

Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

RNF2 1 dataset

ChIP WA09 GSE105028.RNF2.WA09 82 bp overlap

Rarb 1 dataset

Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap

Rarg 1 dataset

Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 249 bp overlap

SMAD3 1 dataset

ChIP BG03 GSE21614.SMAD3.BG03 187 bp overlap

SMARCA4 3 datasets

ChIP WA09 GSE105028.SMARCA4.WA09 348 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 273 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 201 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 414 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 364 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 219 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 184 bp overlap

SOX2 1 dataset

ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 177 bp overlap

SP1 2 datasets

ChIP WA01 ENCSR000BIR.SP1.WA01 190 bp overlap

ChIP WTC11 ENCFF688PEU 501 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 197 bp overlap

ZNF114 1 dataset

ChIP GM23338 ENCFF631OSW 249 bp overlap

ZNF182 1 dataset

ChIP HEK293T GSE78099.ZNF182.HEK293T 143 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 219 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 187 bp overlap

ZNF558 1 dataset

Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap