chr6 : 76,422,633 – 76,423,231

598 bp 77 TFs 0 linked genes

This 598 bp open chromatin element has no linked target genes and is bound by 77 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

77 transcription factors

BCOR 1 dataset

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 266 bp overlap

CEBPD 1 dataset

Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap

CHD7 2 datasets

ChIP H1 ENCFF126NLU 162 bp overlap

ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap

DUX4 1 dataset

Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap

ELF3 1 dataset

Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap

ERF::FOXO1 1 dataset

Motif DE_12h DE_12h-ERFFOXO1_MA1936.2 12 bp overlap

ERF::HOXB13 1 dataset

Motif DE_12h DE_12h-ERFHOXB13_MA1937.2 13 bp overlap

ETV1 1 dataset

Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

Elf5 1 dataset

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

Esrrg 1 dataset

Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap

FOXN3 1 dataset

Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap

GATA6 2 datasets

Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 259 bp overlap

Gata3 1 dataset

Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap

HDAC2 2 datasets

ChIP H1 ENCFF939VKA 237 bp overlap

ChIP WA01 ENCSR000BNR.HDAC2.WA01 258 bp overlap

HOXB13 2 datasets

ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 195 bp overlap

ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 220 bp overlap

HSF2 1 dataset

Motif DE_12h DE_12h-HSF2_MA0770.1 13 bp overlap

IKZF1 1 dataset

Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap

IKZF2 2 datasets

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

ISL2 1 dataset

Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap

Ikzf3 1 dataset

Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap

NANOG 7 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 202 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 492 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 150 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 531 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 449 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 512 bp overlap

ChIP hESC GSE18292.NANOG.hESC 233 bp overlap

NIPBL 2 datasets

ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 307 bp overlap

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 297 bp overlap

NKX3-1 1 dataset

ChIP islet ERP004003.NKX3-1.islet 296 bp overlap

NR2C1 1 dataset

Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap

NR2C2 1 dataset

Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap

NR2F1 1 dataset

Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap

NR2F2 1 dataset

Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap

NR3C1 1 dataset

ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 101 bp overlap

NR4A1 1 dataset

Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap

NR4A2 1 dataset

Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap

Nkx3-2 1 dataset

Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap

Nr1H2 1 dataset

Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap

Nr2e3 1 dataset

Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap

POU2F1::SOX2 2 datasets

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU5F1 9 datasets

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 347 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 409 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 242 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 336 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 166 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 393 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 163 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 146 bp overlap

PRDM1 1 dataset

Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap

PRDM14 1 dataset

ChIP hESC GSE22767.PRDM14.hESC 262 bp overlap

Pou5f1::Sox2 2 datasets

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Ppara 1 dataset

Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap

RAD21 1 dataset

ChIP H1 ENCFF698EWO 241 bp overlap

RNF2 1 dataset

ChIP WA09 GSE105028.RNF2.WA09 350 bp overlap

RXRB 1 dataset

Motif DE_12h DE_12h-RXRB_MA1555.1 14 bp overlap

RXRG 1 dataset

Motif DE_12h DE_12h-RXRG_MA1556.1 14 bp overlap

Rarg 1 dataset

Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap

Rfx6 1 dataset

Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap

Rhox11 2 datasets

Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap

SIX2 2 datasets

ChIP HEK GSE73865.SIX2.HEK 263 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 252 bp overlap

SMAD2 1 dataset

Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 332 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 419 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 386 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 233 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 369 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 429 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 260 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 355 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 253 bp overlap

SPIC 1 dataset

Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap

STAT1::STAT2 1 dataset

Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap

T 1 dataset

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 391 bp overlap

TAL1 1 dataset

ChIP PRIMA5 GSE33850.TAL1.PRIMA5 144 bp overlap

TBX20 1 dataset

Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 315 bp overlap

THAP1 1 dataset

Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap

TRPS1 1 dataset

Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 259 bp overlap

ZNF211 1 dataset

Motif DE_12h DE_12h-ZNF211_MA1974.2 10 bp overlap

ZNF324 1 dataset

Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap

ZNF354A 1 dataset

Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap

ZNF528 1 dataset

Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap

ZNF530 1 dataset

Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap

ZNF667 1 dataset

Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap

ZNF675 1 dataset

Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap

ZNF680 1 dataset

Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap

ZNF75D 1 dataset

Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap