chr6 : 50,824,560 – 50,824,798
238 bp 60 TFs 0 linked genes
This 238 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:50,819,560 – 50,829,798
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 184 bp overlap
Atoh1 1 dataset
Motif ES_0h ES_0h-Atoh1_MA1467.3 7 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 238 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 238 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 238 bp overlap
BRD2 2 datasets
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 235 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD2.K-562_DMSO-IFNG 238 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 195 bp overlap
BRD4 5 datasets
ChIP BE2C GSE80151.BRD4.BE2C 238 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 212 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 203 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 238 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 238 bp overlap
CDK9 1 dataset
ChIP Kelly_DMSO GSE107126.CDK9.Kelly_DMSO 181 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 236 bp overlap
ChIP H1 ENCFF126NLU 238 bp overlap
ChIP H1 ENCFF126NLU 71 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 134 bp overlap
CTCF 23 datasets
ChIP GM23338 ENCFF531QOI 190 bp overlap
ChIP H9 ENCFF152GTF 232 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 224 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 142 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 173 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 213 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 192 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 148 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 107 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 105 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 150 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 69 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 140 bp overlap
ChIP breast_epithelium ENCSR661NXJ.CTCF.breast_epithelium 238 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 238 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 145 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 181 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 238 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 109 bp overlap
ChIP osteocyte ENCFF929FPD 238 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 163 bp overlap
ChIP skin ENCSR485VQV.CTCF.skin 193 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 238 bp overlap
EZH2 4 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 238 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 238 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 238 bp overlap
ChIP neural progenitor cell ENCFF472NFV 238 bp overlap
FOXA1 2 datasets
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 185 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 208 bp overlap
FOXC2 1 dataset
Motif ES_0h ES_0h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
FOXN3 1 dataset
Motif ES_0h ES_0h-FOXN3_MA1489.1 8 bp overlap
Foxj3 1 dataset
Motif ES_0h ES_0h-Foxj3_MA0851.2 9 bp overlap
Foxq1 1 dataset
Motif ES_0h ES_0h-Foxq1_MA0040.2 10 bp overlap
HAND2 1 dataset
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 185 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 186 bp overlap
JARID2 3 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 202 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 177 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 159 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 215 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 210 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 215 bp overlap
KLF11 1 dataset
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF16 1 dataset
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF17 1 dataset
Motif ES_0h ES_0h-KLF17_MA1514.2 14 bp overlap
KLF9 1 dataset
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
MAX 2 datasets
ChIP H1 ENCFF601FOM 238 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 236 bp overlap
MITF 3 datasets
ChIP 501-mel GSE137522.MITF.501-mel 238 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 238 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 238 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 238 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 238 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 133 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 165 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 238 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 99 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 238 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 238 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 238 bp overlap
ChIP hESC GSE18292.NANOG.hESC 102 bp overlap
NEUROD1 1 dataset
Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 1 dataset
Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap
NR1D2 1 dataset
Motif ES_0h ES_0h-NR1D2_MA1532.2 15 bp overlap
Neurod2 1 dataset
Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap
PLAG1 1 dataset
Motif ES_0h ES_0h-PLAG1_MA0163.1 14 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 238 bp overlap
POU5F1 6 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 238 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 175 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 238 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 96 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 159 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 119 bp overlap
PRDM10 1 dataset
ChIP K562 ENCFF740YLK 238 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 163 bp overlap
RREB1 1 dataset
Motif ES_0h ES_0h-RREB1_MA0073.2 19 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 150 bp overlap
SMARCA4 2 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 206 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 238 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 169 bp overlap
SOX13 1 dataset
Motif ES_0h ES_0h-SOX13_MA1120.2 7 bp overlap
SOX2 4 datasets
Motif ES_0h ES_0h-SOX2_MA0143.5 7 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 161 bp overlap
ChIP hESC GSE18292.SOX2.hESC 103 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 238 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 153 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 238 bp overlap
SP3 1 dataset
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP8 2 datasets
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 86 bp overlap
Sox3 1 dataset
Motif ES_0h ES_0h-Sox3_MA0514.3 7 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 176 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 199 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 212 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 238 bp overlap
USF1 5 datasets
ChIP H1 ENCFF090WVU 197 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 133 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 209 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 238 bp overlap
ChIP WTC11 ENCFF699QGS 238 bp overlap
USF2 3 datasets
ChIP H1 ENCFF434EDF 238 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 157 bp overlap
ChIP WTC11 ENCFF139JAW 238 bp overlap
ZNF136 1 dataset
Motif ES_0h ES_0h-ZNF136_MA1588.1 15 bp overlap
ZNF317 1 dataset
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF320 1 dataset
Motif ES_0h ES_0h-ZNF320_MA1976.2 20 bp overlap
ZNF418 1 dataset
Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap
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