chr6 : 21,781,207 – 21,781,413

206 bp 84 TFs 0 linked genes

This 206 bp open chromatin element has no linked target genes and is bound by 84 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

84 transcription factors

Arid3a 1 dataset

Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BRD4 10 datasets

ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 206 bp overlap

ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 206 bp overlap

ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 177 bp overlap

ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 81 bp overlap

ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 146 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 206 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 206 bp overlap

ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 206 bp overlap

ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 206 bp overlap

ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 206 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

CHD2 1 dataset

ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 78 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

DUX4 1 dataset

Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap

Ddit3::Cebpa 1 dataset

Motif DE_12h DE_12h-Ddit3Cebpa_MA0019.2 10 bp overlap

Dlx2 1 dataset

Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap

EGR2 1 dataset

ChIP HEK293 ENCFF336LFH 206 bp overlap

EN2 1 dataset

Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap

EP300 1 dataset

ChIP SK-N-SH ENCFF829RWA 50 bp overlap

GATA2 3 datasets

ChIP SH-SY5Y ENCFF485YIB 56 bp overlap

ChIP SK-N-SH ENCFF764OZD 206 bp overlap

ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 179 bp overlap

GATA6 4 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 206 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 206 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 206 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 206 bp overlap

GBX1 1 dataset

Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

GLIS1 1 dataset

ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 168 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

JUN 2 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 206 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 206 bp overlap

KDM1A 1 dataset

ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 194 bp overlap

L3MBTL2 2 datasets

ChIP HEK293T ENCFF482NJV 206 bp overlap

ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 165 bp overlap

LBX1 1 dataset

Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

LHX9 1 dataset

Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap

Lhx1 1 dataset

Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap

MAX 1 dataset

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 167 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

MXI1 2 datasets

ChIP SK-N-SH ENCFF746HVJ 206 bp overlap

ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 206 bp overlap

MYC 1 dataset

ChIP SK-N-SH GSE138295.MYC.SK-N-SH 183 bp overlap

MYCN 9 datasets

ChIP BE2C GSE80151.MYCN.BE2C 206 bp overlap

ChIP CHP-134 GSE129588.MYCN.CHP-134 206 bp overlap

ChIP IMR-5_CD532 GSE78957.MYCN.IMR-5_CD532 92 bp overlap

ChIP Kelly GSE80151.MYCN.Kelly 147 bp overlap

ChIP Kelly GSE94822.MYCN.Kelly 169 bp overlap

ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 201 bp overlap

ChIP NB-1643 GSE138295.MYCN.NB-1643 206 bp overlap

ChIP NB-1643 GSE94782.MYCN.NB-1643 186 bp overlap

ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 204 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NFIL3 1 dataset

Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap

NKX2-2 1 dataset

Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap

NUTM1 1 dataset

ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 95 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

PHIP 1 dataset

ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 100 bp overlap

PITX3 1 dataset

ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 206 bp overlap

POU6F1 1 dataset

Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap

POU6F2 1 dataset

Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap

PRRX2 1 dataset

Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

RCOR1 1 dataset

ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 206 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 206 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 206 bp overlap

SMAD2_3 2 datasets

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 206 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 206 bp overlap

SMARCA4 4 datasets

ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 100 bp overlap

ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 195 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 206 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 206 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 200 bp overlap

SMARCC1 4 datasets

ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 140 bp overlap

ChIP DE_D1 S15-DE-d1-BAF155-exp1 206 bp overlap

ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 206 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 206 bp overlap

T 1 dataset

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 153 bp overlap

TCF4 1 dataset

ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 173 bp overlap

TP53 1 dataset

ChIP SaOS-2 GSE15780.TP53.SaOS-2 155 bp overlap

TP73_DELTANP 1 dataset

ChIP SaOS-2 GSE15780.TP73_DELTANP.SaOS-2 126 bp overlap

TSHZ2 1 dataset

ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 206 bp overlap

TWIST1 2 datasets

ChIP BE2C GSE80151.TWIST1.BE2C 159 bp overlap

ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 159 bp overlap

USF1 3 datasets

ChIP H1 ENCFF090WVU 133 bp overlap

ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 153 bp overlap

ChIP WA01 ENCSR000BIU.USF1.WA01 150 bp overlap

VENTX 1 dataset

Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap

WT1 1 dataset

ChIP HEK293 ENCSR966PJJ.WT1.HEK293 170 bp overlap

Wt1 2 datasets

Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap

YY1 3 datasets

ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 133 bp overlap

ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 182 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 113 bp overlap

ZBTB44 1 dataset

ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 170 bp overlap

ZFHX2 1 dataset

ChIP HEK293 ENCFF167TUA 206 bp overlap

ZIC1 1 dataset

Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap

ZIC4 1 dataset

Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap

ZIC5 1 dataset

Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap

ZNF18 2 datasets

ChIP HEK293 ENCFF066NGR 206 bp overlap

ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 176 bp overlap

ZNF214 1 dataset

Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap

ZNF331 1 dataset

Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap

ZNF35 1 dataset

ChIP HEK293 GSE76494.ZNF35.HEK293 124 bp overlap

ZNF362 1 dataset

ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 123 bp overlap

ZNF561 1 dataset

ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 206 bp overlap

ZNF596 1 dataset

ChIP HEK293 GSE76494.ZNF596.HEK293 148 bp overlap

ZNF600 1 dataset

ChIP HEK293 ENCFF785JSX 206 bp overlap

ZNF75A 1 dataset

Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap

ZNF85 1 dataset

Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap