chr5 : 174,718,149 174,718,524
375 bp 66 TFs 1 linked gene
This 375 bp open chromatin element is linked to MSX2 and is bound by 66 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
MSX2 6.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:174,713,149 – 174,723,524
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AR 1 dataset
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 90 bp overlap
ARID1A 5 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 150 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 375 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 77 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 142 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 134 bp overlap
CEBPG 1 dataset
Motif DE_24h DE_24h-CEBPG_MA1636.2 10 bp overlap
CTCF 4 datasets
ChIP MCF-7 ENCFF198DQX 153 bp overlap
ChIP MCF-7 ENCFF424NQR 127 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 151 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 98 bp overlap
EHF 1 dataset
Motif DE_24h DE_24h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_24h DE_24h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_24h DE_24h-ELF3_MA0640.3 9 bp overlap
ELK4 1 dataset
Motif DE_24h DE_24h-ELK4_MA0076.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 222 bp overlap
ESR1 9 datasets
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 141 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 75 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 55 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 90 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 131 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 181 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 172 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 70 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 122 bp overlap
ESRRA 2 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 213 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 92 bp overlap
ETV1 1 dataset
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
EZH2 8 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 288 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 252 bp overlap
ChIP A-673 ENCSR179SAO.EZH2.A-673 345 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 364 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 310 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 375 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 286 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 150 bp overlap
Erg 1 dataset
Motif DE_24h DE_24h-Erg_MA0474.4 10 bp overlap
FOS 3 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 283 bp overlap
ChIP MCF-7 ENCFF282FWZ 72 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 153 bp overlap
FOSL2 2 datasets
ChIP MCF-7 ENCFF188KBZ 94 bp overlap
ChIP MCF-7 ENCFF188KBZ 296 bp overlap
FOXA1 11 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 277 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 165 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 237 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 50 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 55 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 50 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 118 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 55 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 102 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 150 bp overlap
ChIP primary-breast-cancer_B4_DSG GSE114737.FOXA1.primary-breast-cancer_B4_DSG 191 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 375 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 363 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 138 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 146 bp overlap
GABPA 2 datasets
Motif DE_24h DE_24h-GABPA_MA0062.4 10 bp overlap
ChIP VCaP GSE49091.GABPA.VCaP 155 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 267 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 375 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 243 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 375 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 373 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 137 bp overlap
Hand1 1 dataset
Motif DE_24h DE_24h-Hand1_MA2123.1 9 bp overlap
Ikzf3 1 dataset
Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 128 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 127 bp overlap
JUN 10 datasets
ChIP 786-O GSE86092.JUN.786-O 55 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 75 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 299 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 375 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 375 bp overlap
ChIP MCF-7_E2 GSE102410.JUN.MCF-7_E2 82 bp overlap
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 86 bp overlap
ChIP MCF-7_TamR_BD610326 GSE128445.JUN.MCF-7_TamR_BD610326 89 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.JUN.MCF-7_Tamoxifen 74 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 294 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 375 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 117 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 237 bp overlap
NR2C1 1 dataset
Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 178 bp overlap
Nr1H2 1 dataset
Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap
Nr2f6 1 dataset
Motif DE_24h DE_24h-Nr2f6_MA0677.2 13 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 375 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 375 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 181 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 375 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 234 bp overlap
PPARD 1 dataset
Motif DE_24h DE_24h-PPARD_MA1550.2 14 bp overlap
PRDM9 1 dataset
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
RARA 1 dataset
Motif DE_24h DE_24h-RARA_MA0729.1 18 bp overlap
RORA 1 dataset
Motif DE_24h DE_24h-RORA_MA0072.2 11 bp overlap
RXRB 1 dataset
Motif DE_24h DE_24h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_24h DE_24h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif DE_24h DE_24h-Rxra_MA0512.2 14 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 295 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 375 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 375 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 322 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 375 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 375 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 326 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 151 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 59 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 202 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_clone14 147 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 318 bp overlap
SMARCB1 5 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 200 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 90 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 132 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 78 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 138 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 187 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 336 bp overlap
SNAI2 1 dataset
ChIP RD GSE137168.SNAI2.RD 223 bp overlap
STAT1 1 dataset
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 92 bp overlap
STAT3 4 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 167 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 249 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 187 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 153 bp overlap
SUZ12 1 dataset
ChIP hiPSC GSE124903.SUZ12.hiPSC 375 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 162 bp overlap
Thap11 1 dataset
Motif DE_24h DE_24h-Thap11_MA1573.2 14 bp overlap
ZFP14 1 dataset
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
ZKSCAN3 1 dataset
Motif DE_24h DE_24h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 365 bp overlap
ZNF416 1 dataset
Motif DE_24h DE_24h-ZNF416_MA1979.2 10 bp overlap
ZNF85 1 dataset
Motif DE_24h DE_24h-ZNF85_MA1720.2 12 bp overlap