chr5 : 128,402,602 128,403,023
421 bp 72 TFs 0 linked genes
This 421 bp open chromatin element has no linked target genes and is bound by 72 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:128,397,602 – 128,408,023
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-075 222 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 62 bp overlap
ARID2 1 dataset
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 217 bp overlap
CEBPB 1 dataset
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 84 bp overlap
DPF2 4 datasets
ChIP BIN-67 GSE117734.DPF2.BIN-67 146 bp overlap
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 228 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 191 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 353 bp overlap
DPRX 1 dataset
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 226 bp overlap
ELF3 1 dataset
ChIP PDAC GSE64557.ELF3.PDAC 70 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 196 bp overlap
EP300 3 datasets
ChIP Ishikawa ENCFF364ZWT 313 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 279 bp overlap
ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 65 bp overlap
ESR1 16 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 249 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 173 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 190 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 155 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 341 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 272 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 137 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 143 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 311 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 242 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 186 bp overlap
ChIP Ishikawa_EnhiE2 GSE99905.ESR1.Ishikawa_EnhiE2 115 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 278 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 149 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 340 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 371 bp overlap
FLI1 2 datasets
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 100 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 50 bp overlap
FOXA1 11 datasets
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 305 bp overlap
ChIP Ishikawa ENCSR000BKW.FOXA1.Ishikawa 255 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 277 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 255 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 177 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 331 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 310 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 421 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 270 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 233 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 136 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 421 bp overlap
ChIP DE DE-FOXA2-2 421 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 269 bp overlap
FOXF1 1 dataset
ChIP GIST48 GSE106624.FOXF1.GIST48 115 bp overlap
FOXM1 2 datasets
ChIP Ishikawa ENCFF578VDD 337 bp overlap
ChIP Ishikawa ENCSR000BUS.FOXM1.Ishikawa 322 bp overlap
FOXP2 1 dataset
Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap
GATA1 1 dataset
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 334 bp overlap
ChIP DE DE-GATA4-2 343 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 319 bp overlap
ChIP DE DE-GATA6-2 388 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 118 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 57 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 94 bp overlap
Hand1 1 dataset
Motif DE_48h DE_48h-Hand1_MA2123.1 9 bp overlap
Hnf1A 1 dataset
Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap
KMT2C 2 datasets
ChIP BIN-67_ctrl GSE117734.KMT2C.BIN-67_ctrl 149 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 218 bp overlap
Lef1 1 dataset
Motif DE_48h DE_48h-Lef1_MA0768.3 8 bp overlap
MAF 1 dataset
ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 81 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 75 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 248 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 173 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 243 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 314 bp overlap
NFYA 1 dataset
Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap
NR2C1 1 dataset
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 154 bp overlap
Nr1H2 1 dataset
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 150 bp overlap
PKNOX1 1 dataset
Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap
PROP1 1 dataset
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 224 bp overlap
SMAD2 2 datasets
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 282 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 407 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 269 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 398 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 410 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 147 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 234 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 253 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 239 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 341 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 95 bp overlap
SMARCC1 4 datasets
ChIP BIN-67 GSE117734.SMARCC1.BIN-67 192 bp overlap
ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 185 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 189 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 333 bp overlap
SOX12 1 dataset
Motif DE_60h DE_60h-SOX12_MA1561.2 10 bp overlap
SOX14 1 dataset
Motif DE_60h DE_60h-SOX14_MA1562.2 9 bp overlap
SOX15 1 dataset
Motif DE_60h DE_60h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 269 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 364 bp overlap
SOX18 1 dataset
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 236 bp overlap
SOX8 1 dataset
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 215 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 351 bp overlap
Sox17 1 dataset
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 270 bp overlap
TCF7 1 dataset
Motif DE_48h DE_48h-TCF7_MA0769.3 7 bp overlap
TCF7L2 1 dataset
Motif DE_48h DE_48h-TCF7L2_MA0523.2 9 bp overlap
TEAD4 2 datasets
ChIP Ishikawa ENCFF772OTG 301 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 294 bp overlap
THRA 1 dataset
Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap
THRB 1 dataset
Motif DE_60h DE_60h-THRB_MA1576.2 18 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 178 bp overlap
ZC3H10 1 dataset
ChIP SK-N-SH ENCFF465WAR 84 bp overlap