chr5 : 126,735,879 126,736,525
646 bp 84 TFs 5 linked genes
This 646 bp open chromatin element is linked to 5 target genes and is bound by 84 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
LMNB1-DT 40.2 kb Distal Multiome
LMNB1 40.8 kb Distal Multiome
PHAX 135.4 kb Distal Multiome
ALDH7A1 141.1 kb Distal Multiome
MARCHF3 294.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:126,730,879 – 126,741,525
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 150 bp overlap
ARNT::HIF1A 2 datasets
Motif DE_24h DE_24h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_36h DE_36h-ARNTHIF1A_MA0259.2 5 bp overlap
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BARX2 1 dataset
Motif DE_36h DE_36h-BARX2_MA1471.2 9 bp overlap
BCL11A 2 datasets
Motif DE_24h DE_24h-BCL11A_MA2324.1 7 bp overlap
Motif DE_36h DE_36h-BCL11A_MA2324.1 7 bp overlap
BRD3 2 datasets
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 235 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 174 bp overlap
BRD4 2 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 243 bp overlap
ChIP HCC1395_JQ1 GSE63581.BRD4.HCC1395_JQ1 232 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
CHD4 1 dataset
ChIP HaCaT GSE139685.CHD4.HaCaT 240 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF262VBH 163 bp overlap
ChIP BLaER1 ENCFF262VBH 238 bp overlap
ChIP BLaER1 ENCFF364PUR 206 bp overlap
Creb3l2 2 datasets
Motif DE_24h DE_24h-Creb3l2_MA0608.1 9 bp overlap
Motif DE_36h DE_36h-Creb3l2_MA0608.1 9 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_36h DE_36h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_36h DE_36h-Dlx5_MA1476.3 8 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 335 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 364 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 161 bp overlap
Elf5 1 dataset
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
FOS 1 dataset
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 150 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 397 bp overlap
ChIP DE DE-FOXA2-2 320 bp overlap
GATA2 1 dataset
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 423 bp overlap
ChIP DE DE-GATA4-2 436 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 372 bp overlap
ChIP DE DE-GATA6-2 420 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 517 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 646 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 601 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 445 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 646 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 579 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 483 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HIC2 2 datasets
Motif DE_24h DE_24h-HIC2_MA0738.2 6 bp overlap
Motif DE_36h DE_36h-HIC2_MA0738.2 6 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 526 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 621 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 561 bp overlap
KLF1 3 datasets
ChIP HEK293 ENCFF159QSW 128 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 223 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 142 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 215 bp overlap
MAX 2 datasets
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 194 bp overlap
ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 152 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 376 bp overlap
MGA 2 datasets
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 252 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 395 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 142 bp overlap
NR3C1 6 datasets
ChIP BEAS-2B_DEX GSE125623.NR3C1.BEAS-2B_DEX 197 bp overlap
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 434 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 478 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 582 bp overlap
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 380 bp overlap
ChIP BEAS-2B_shNR3C1_Veh_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_Veh_IA1 513 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
Nr2F6 1 dataset
Motif DE_36h DE_36h-Nr2F6_MA0728.1 15 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 423 bp overlap
PRDM1 3 datasets
Motif DE_36h DE_36h-PRDM1_MA0508.4 7 bp overlap
ChIP HeLa-S3 ENCFF893HDJ 265 bp overlap
ChIP HeLa-S3 ENCSR000ECY.PRDM1.HeLa-S3 176 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
REST 1 dataset
Motif DE_36h DE_36h-REST_MA0138.3 20 bp overlap
RORC 1 dataset
Motif DE_36h DE_36h-RORC_MA1151.2 10 bp overlap
RUNX1 1 dataset
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 137 bp overlap
Rarb 1 dataset
Motif DE_36h DE_36h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_36h DE_36h-Rarg_MA0859.2 15 bp overlap
Rfx6 2 datasets
Motif DE_24h DE_24h-Rfx6_MA1724.2 9 bp overlap
Motif DE_36h DE_36h-Rfx6_MA1724.2 9 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 499 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 646 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 646 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 646 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 646 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 646 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 646 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 570 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 264 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 404 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 72 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 149 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 322 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_23aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_23aa-SSX-Tail 281 bp overlap
ChIP fibroblast_7aa GSE139053.SS18-SSX.fibroblast_7aa 204 bp overlap
SUPT5H 1 dataset
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 140 bp overlap
TBX4 2 datasets
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
TFAP2A 2 datasets
Motif DE_24h DE_24h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_36h DE_36h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 2 datasets
Motif DE_24h DE_24h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_36h DE_36h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 2 datasets
Motif DE_24h DE_24h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_36h DE_36h-TFAP2C_MA0524.3 11 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Yy1 3 datasets
Motif DE_24h DE_24h-Yy1_MA0095.4 8 bp overlap
Motif DE_36h DE_36h-Yy1_MA0095.4 8 bp overlap
Motif DE_36h DE_36h-Yy1_MA0095.4 8 bp overlap
ZNF22 1 dataset
ChIP HEK293 GSE76494.ZNF22.HEK293 143 bp overlap
ZNF24 2 datasets
Motif DE_24h DE_24h-ZNF24_MA1124.1 13 bp overlap
Motif DE_36h DE_36h-ZNF24_MA1124.1 13 bp overlap
ZNF320 1 dataset
Motif DE_36h DE_36h-ZNF320_MA1976.2 20 bp overlap
ZNF354C 2 datasets
Motif DE_24h DE_24h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 150 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 120 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 295 bp overlap
ZNF680 1 dataset
Motif DE_36h DE_36h-ZNF680_MA1729.2 11 bp overlap
ZNF768 2 datasets
Motif DE_24h DE_24h-ZNF768_MA1731.2 9 bp overlap
Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap
ZNF8 1 dataset
Motif DE_36h DE_36h-ZNF8_MA1718.1 20 bp overlap
ZNF85 2 datasets
Motif DE_24h DE_24h-ZNF85_MA1720.2 12 bp overlap
Motif DE_36h DE_36h-ZNF85_MA1720.2 12 bp overlap