chr5 : 116,732,229 116,732,919
690 bp 80 TFs 0 linked genes
This 690 bp open chromatin element has no linked target genes and is bound by 80 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:116,727,229 – 116,737,919
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_60h DE_60h-Arid3a_MA0151.1 6 bp overlap
BRD4 3 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 249 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 403 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 160 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 340 bp overlap
CDX2 1 dataset
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
CTCFL 1 dataset
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 125 bp overlap
DUX4 2 datasets
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 384 bp overlap
DUXA 1 dataset
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
EBF1 1 dataset
Motif DE_60h DE_60h-EBF1_MA0154.5 11 bp overlap
EBF3 1 dataset
Motif DE_60h DE_60h-EBF3_MA1637.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 408 bp overlap
Ebf4 1 dataset
Motif DE_60h DE_60h-Ebf4_MA2122.1 11 bp overlap
FOXA1 1 dataset
Motif DE_60h DE_60h-FOXA1_MA0148.5 8 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 279 bp overlap
ChIP DE DE-FOXA2-1 427 bp overlap
ChIP DE DE-FOXA2-2 445 bp overlap
Motif DE_60h DE_60h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_60h DE_60h-FOXA3_MA1683.2 7 bp overlap
FOXD1 1 dataset
Motif DE_60h DE_60h-FOXD1_MA0031.2 7 bp overlap
FOXD3 1 dataset
Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap
FOXF2 1 dataset
Motif DE_60h DE_60h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_60h DE_60h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_60h DE_60h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_60h DE_60h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_60h DE_60h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_60h DE_60h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_60h DE_60h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_60h DE_60h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_60h DE_60h-FOXP1_MA0481.4 7 bp overlap
FOXP2 1 dataset
Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_60h DE_60h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_60h DE_60h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_60h DE_60h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_60h DE_60h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_60h DE_60h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_60h DE_60h-Foxj3_MA0851.2 9 bp overlap
Foxo1 1 dataset
Motif DE_60h DE_60h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_60h DE_60h-Foxo3_MA0157.4 7 bp overlap
GATA2 3 datasets
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 138 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 176 bp overlap
GATA3 2 datasets
ChIP Kelly GSE65664.GATA3.Kelly 181 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 231 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 538 bp overlap
ChIP DE DE-GATA4-2 606 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 323 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 81 bp overlap
ChIP foregut GSE117136.GATA4.foregut 430 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 338 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 495 bp overlap
ChIP DE DE-GATA6-2 520 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 503 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 480 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 449 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 487 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 486 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 580 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 433 bp overlap
ChIP foregut GSE117136.GATA6.foregut 350 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 383 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 263 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 253 bp overlap
Hoxa13 1 dataset
Motif DE_60h DE_60h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif DE_60h DE_60h-Hoxd13_MA0909.4 7 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 268 bp overlap
LHX6 1 dataset
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA1639.2 9 bp overlap
MEIS2 1 dataset
Motif DE_60h DE_60h-MEIS2_MA1640.2 9 bp overlap
MZF1 1 dataset
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
PBX2 1 dataset
Motif DE_60h DE_60h-PBX2_MA1113.3 9 bp overlap
PHOX2A 1 dataset
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 2 datasets
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 328 bp overlap
POU2F1 1 dataset
Motif DE_60h DE_60h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_60h DE_60h-POU2F2_MA0507.3 13 bp overlap
POU4F1 1 dataset
Motif DE_60h DE_60h-POU4F1_MA0790.2 12 bp overlap
POU4F3 1 dataset
Motif DE_60h DE_60h-POU4F3_MA0791.2 12 bp overlap
PROP1 1 dataset
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
Pax7 1 dataset
Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 69 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 204 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 348 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 412 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 403 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 341 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 356 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 381 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 326 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 215 bp overlap
SMARCA4 4 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 312 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 231 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 374 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 404 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 284 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 200 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 248 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 690 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 110 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 192 bp overlap
TEAD3 1 dataset
Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 163 bp overlap
TFAP2C 1 dataset
ChIP WA09 GSE105081.TFAP2C.WA09 141 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
ZNF211 1 dataset
Motif DE_60h DE_60h-ZNF211_MA1974.2 10 bp overlap
ZNF8 1 dataset
Motif DE_60h DE_60h-ZNF8_MA1718.1 20 bp overlap