chr1 : 94,544,799 – 94,544,931
132 bp 53 TFs 2 linked genes
This 132 bp open chromatin element is linked to ENSG00000288736 and F3 and is bound by 53 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000288736 2.9 kb Proximal Proximity
F3 3.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:94,539,799 – 94,549,931
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 132 bp overlap
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 132 bp overlap
BRD2 2 datasets
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 117 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD2.SUM159PT_DMSO 132 bp overlap
BRD4 13 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 132 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 113 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 132 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 123 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 132 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 132 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD4.SUM159PT_DMSO 132 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 132 bp overlap
ChIP SUM159PT_DMSO_72h GSE87418.BRD4.SUM159PT_DMSO_72h 132 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 132 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 132 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 132 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 132 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 132 bp overlap
ChIP K562 ENCFF963TXY 132 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 132 bp overlap
ChIP K562 ENCFF673OEZ 132 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 132 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 132 bp overlap
CHD1 1 dataset
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 132 bp overlap
CTCF 100 datasets
ChIP AG04449 ENCFF248MBD 129 bp overlap
ChIP AG04450 ENCFF116DJL 132 bp overlap
ChIP AG09309 ENCFF478XPS 132 bp overlap
ChIP AG09319 ENCFF401ZTN 132 bp overlap
ChIP AG10803 ENCFF549AQK 132 bp overlap
ChIP ASC GSE21366.CTCF.ASC 132 bp overlap
ChIP BJ ENCFF434HEC 132 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 132 bp overlap
ChIP HFFc6 ENCFF005CJI 132 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 121 bp overlap
ChIP IMR-90 ENCFF887MRH 56 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 132 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 132 bp overlap
ChIP IMR-90_siRNA GSE125639.CTCF.IMR-90_siRNA 132 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 131 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 119 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 132 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 119 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 132 bp overlap
ChIP RWPE2 ENCFF911IEE 132 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 112 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 110 bp overlap
ChIP WI-38 ENCSR000DYB.CTCF.WI-38 132 bp overlap
ChIP WI38 ENCFF841AXJ 132 bp overlap
ChIP adrenal gland ENCFF886WNR 132 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 132 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 132 bp overlap
ChIP artery_tibial ENCSR699BEK.CTCF.artery_tibial 132 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 132 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 130 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 128 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 132 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 132 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 132 bp overlap
ChIP cardiac fibroblast ENCFF326EDY 132 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 132 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 132 bp overlap
ChIP chondrocyte ENCFF134ORZ 132 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 132 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 132 bp overlap
ChIP endodermal cell ENCFF471YCZ 132 bp overlap
ChIP endodermal cell ENCFF471YCZ 91 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 132 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ALA.CTCF.endothelial_umbilical-vein 111 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 132 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 132 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 117 bp overlap
ChIP epithelial_mammary ENCSR000ALV.CTCF.epithelial_mammary 115 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 132 bp overlap
ChIP fibroblast of dermis ENCFF986DNJ 132 bp overlap
ChIP fibroblast of lung ENCFF084DUH 132 bp overlap
ChIP fibroblast of lung ENCFF356FDN 132 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 132 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 132 bp overlap
ChIP fibroblast of pulmonary artery ENCFF742RSV 132 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 132 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 132 bp overlap
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 132 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 132 bp overlap
ChIP fibroblast_DERMAL ENCSR000APM.CTCF.fibroblast_DERMAL 132 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DWQ.CTCF.fibroblast_FORESKIN 132 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 132 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 132 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 132 bp overlap
ChIP fibroblast_LUNG ENCSR000ANO.CTCF.fibroblast_LUNG 132 bp overlap
ChIP fibroblast_LUNG ENCSR000DWY.CTCF.fibroblast_LUNG 132 bp overlap
ChIP fibroblast_LUNG ENCSR000DVA.CTCF.fibroblast_LUNG 129 bp overlap
ChIP fibroblast_MAMMARY ENCSR000DUU.CTCF.fibroblast_MAMMARY 121 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 132 bp overlap
ChIP fibroblast_SKIN_ABDOMEN ENCSR000DPV.CTCF.fibroblast_SKIN_ABDOMEN 132 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 120 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 132 bp overlap
ChIP foreskin fibroblast ENCFF671HLG 132 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 132 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 132 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 132 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 132 bp overlap
ChIP keratinocyte ENCFF667ULX 132 bp overlap
ChIP keratinocyte ENCFF805QIE 132 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 132 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 132 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 132 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 132 bp overlap
ChIP mammary epithelial cell ENCFF873ERE 132 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 132 bp overlap
ChIP nerve_tibial ENCSR469POZ.CTCF.nerve_tibial 132 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 79 bp overlap
ChIP osteoblast ENCFF491ZJZ 132 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 132 bp overlap
ChIP ovary ENCFF062XMG 132 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 132 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 132 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 127 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 132 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 132 bp overlap
ChIP smooth muscle cell ENCFF656FBT 132 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 126 bp overlap
ChIP thoracic aorta ENCFF012WJQ 132 bp overlap
ChIP tibial nerve ENCFF477JAK 132 bp overlap
ChIP uterus ENCSR392SFJ.CTCF.uterus 131 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 102 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
FOS 2 datasets
ChIP IMR-90 ENCFF179EDA 105 bp overlap
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 79 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 132 bp overlap
FOSL2 1 dataset
ChIP hESC GSE69539.FOSL2.hESC 58 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 132 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 132 bp overlap
FOXL2 3 datasets
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 132 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 132 bp overlap
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 89 bp overlap
GATA1 9 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 98 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 110 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 55 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 132 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 132 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 132 bp overlap
ChIP erythroblast ENCFF867JAR 132 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 132 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 132 bp overlap
GATA2 6 datasets
ChIP ESF GSE108408.GATA2.ESF 81 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 132 bp overlap
ChIP K562 ENCFF544PCK 132 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 132 bp overlap
ChIP dermal-fibroblast GSE51025.GATA2.dermal-fibroblast 132 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 132 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 132 bp overlap
ChIP DE DE-GATA4-1 132 bp overlap
ChIP DE DE-GATA4-2 132 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 132 bp overlap
ChIP foregut GSE117136.GATA4.foregut 132 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 132 bp overlap
ChIP DE DE-GATA6-2 132 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 132 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 132 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 132 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 132 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 132 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 132 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 132 bp overlap
GFI1B 5 datasets
ChIP CD34 GSE52924.GFI1B.CD34 132 bp overlap
ChIP K-562 ENCSR509GDT.GFI1B.K-562 132 bp overlap
ChIP K-562 GSE117944.GFI1B.K-562 132 bp overlap
ChIP SET-2 GSE121424.GFI1B.SET-2 132 bp overlap
ChIP SET-2_GSK GSE121424.GFI1B.SET-2_GSK 132 bp overlap
GRHL2 1 dataset
ChIP OVCA429 GSE71018.GRHL2.OVCA429 105 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 132 bp overlap
ChIP K562 ENCFF968WBH 132 bp overlap
HDAC2 4 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 132 bp overlap
ChIP K-562 ENCSR000BMG.HDAC2.K-562 115 bp overlap
ChIP K562 ENCFF738SPU 132 bp overlap
ChIP K562 ENCFF744ALD 132 bp overlap
HMBOX1 2 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 132 bp overlap
ChIP K562 ENCFF055GAZ 132 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 73 bp overlap
KDM1A 6 datasets
ChIP K-562 GSE117944.KDM1A.K-562 132 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 132 bp overlap
ChIP K-562 ENCSR360HRA.KDM1A.K-562 132 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 129 bp overlap
ChIP K562 ENCFF128TYE 132 bp overlap
ChIP K562 ENCFF133OLU 132 bp overlap
KLF1 1 dataset
ChIP erythroid_R3R4 GSE43625.KLF1.erythroid_R3R4 75 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 132 bp overlap
MED1 5 datasets
ChIP MOLM-14 GSE65138.MED1.MOLM-14 132 bp overlap
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 132 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 113 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 132 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 132 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 113 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 87 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 132 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 107 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 132 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 132 bp overlap
RAD21 4 datasets
ChIP HeLa-S3 ENCFF775CHI 132 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 97 bp overlap
ChIP IMR-90 ENCFF752PTH 132 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 132 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 122 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 132 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 132 bp overlap
SMARCA2 2 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 132 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 132 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 132 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 85 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 132 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 132 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 132 bp overlap
SMC3 2 datasets
ChIP IMR-90 ENCFF627LON 65 bp overlap
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 132 bp overlap
STAT1 2 datasets
ChIP FaDu_BB608 GSE78212.STAT1.FaDu_BB608 94 bp overlap
ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 132 bp overlap
TAL1 6 datasets
ChIP K-562 GSE107726.TAL1.K-562 132 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 132 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 132 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 132 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 132 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 132 bp overlap
TCF12 1 dataset
ChIP K-562 ENCSR744WOO.TCF12.K-562 132 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 128 bp overlap
ChIP K562 ENCFF319QZT 132 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 132 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 98 bp overlap
ZNF644 1 dataset
ChIP HEK293T GSE62616.ZNF644.HEK293T 132 bp overlap
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