chr5 : 69,292,403 – 69,292,763
360 bp 69 TFs 0 linked genes
This 360 bp open chromatin element has no linked target genes and is bound by 69 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:69,287,403 – 69,297,763
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 236 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 258 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 265 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 230 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 309 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 285 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 223 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 328 bp overlap
DPRX 1 dataset
Motif DE_36h DE_36h-DPRX_MA1480.2 9 bp overlap
EBF3 1 dataset
Motif DE_36h DE_36h-EBF3_MA1637.2 9 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 323 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 175 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 212 bp overlap
Ebf2 1 dataset
Motif DE_36h DE_36h-Ebf2_MA1604.2 9 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 360 bp overlap
ChIP DE DE-FOXA2-2 317 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 248 bp overlap
FOXO1::ELF1 2 datasets
Motif DE_36h DE_36h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif DE_60h DE_60h-FOXO1ELF1_MA1953.2 13 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 345 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 336 bp overlap
ChIP SK-N-SH ENCFF764OZD 296 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 327 bp overlap
GATA3 4 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 306 bp overlap
ChIP SH-SY5Y ENCFF475HYF 351 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 331 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 142 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 360 bp overlap
ChIP DE DE-GATA4-2 360 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 360 bp overlap
ChIP DE DE-GATA6-2 360 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 360 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 360 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 360 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 360 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 360 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 360 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 360 bp overlap
GFI1B 2 datasets
ChIP K-562 ENCSR509GDT.GFI1B.K-562 105 bp overlap
ChIP SET-2 GSE121424.GFI1B.SET-2 105 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 360 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 329 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR711VWL.HDAC1.K-562 257 bp overlap
HDAC2 2 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 115 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 260 bp overlap
HNF4A 2 datasets
Motif DE_36h DE_36h-HNF4A_MA1494.2 14 bp overlap
Motif DE_60h DE_60h-HNF4A_MA1494.2 14 bp overlap
INSM1 3 datasets
Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap
Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap
Motif DE_60h DE_60h-INSM1_MA0155.1 12 bp overlap
IRF3 1 dataset
Motif DE_36h DE_36h-IRF3_MA1418.2 17 bp overlap
IRF5 1 dataset
Motif DE_36h DE_36h-IRF5_MA1420.1 14 bp overlap
IRF9 1 dataset
Motif DE_36h DE_36h-IRF9_MA0653.1 15 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 212 bp overlap
Irf1 1 dataset
Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap
KDM1A 3 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 263 bp overlap
ChIP K-562 ENCSR360HRA.KDM1A.K-562 210 bp overlap
ChIP K562 ENCFF128TYE 324 bp overlap
KLF9 1 dataset
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 293 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 286 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_36h DE_36h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_36h DE_36h-MEIS3_MA0775.2 7 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 112 bp overlap
MYB 2 datasets
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
MYC 1 dataset
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 136 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 291 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 232 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 194 bp overlap
Nr2F6 2 datasets
Motif DE_36h DE_36h-Nr2F6_MA0728.1 15 bp overlap
Motif DE_60h DE_60h-Nr2F6_MA0728.1 15 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 302 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 351 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 185 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 360 bp overlap
Pparg::Rxra 1 dataset
Motif DE_36h DE_36h-PpargRxra_MA0065.3 13 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 255 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 275 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 245 bp overlap
Rarb 2 datasets
Motif DE_36h DE_36h-Rarb_MA0857.1 16 bp overlap
Motif DE_60h DE_60h-Rarb_MA0857.1 16 bp overlap
Rarg 2 datasets
Motif DE_36h DE_36h-Rarg_MA0859.2 15 bp overlap
Motif DE_60h DE_60h-Rarg_MA0859.2 15 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 313 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 360 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 313 bp overlap
SMARCA4 2 datasets
ChIP NGP GSE134626.SMARCA4.NGP 130 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 202 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 170 bp overlap
SOX10 1 dataset
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 334 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 291 bp overlap
SOX4 1 dataset
Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap
Sox11 1 dataset
Motif DE_36h DE_36h-Sox11_MA0869.3 8 bp overlap
Sox6 1 dataset
Motif DE_36h DE_36h-Sox6_MA0515.1 10 bp overlap
TCF4 3 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 266 bp overlap
ChIP SK-N-SH ENCFF270OWF 199 bp overlap
ChIP SK-N-SH ENCFF270OWF 360 bp overlap
TEAD4 1 dataset
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 289 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 147 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 258 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 170 bp overlap
TWIST1 1 dataset
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 165 bp overlap
ZBTB24 3 datasets
Motif DE_36h DE_36h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_36h DE_36h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_60h DE_60h-ZBTB24_MA2330.1 10 bp overlap
ZBTB7A 1 dataset
ChIP Hep-G2 ENCSR000BQA.ZBTB7A.Hep-G2 107 bp overlap
ZNF135 2 datasets
Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
ZNF692 1 dataset
Motif DE_36h DE_36h-ZNF692_MA1986.2 8 bp overlap
Zfp335 2 datasets
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
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