chr5 : 56,823,151 – 56,823,779
628 bp 65 TFs 1 linked gene
This 628 bp open chromatin element is linked to MAP3K1 and is bound by 65 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MAP3K1 7.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:56,818,151 – 56,828,779
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ATRX 2 datasets
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 103 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 220 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 53 bp overlap
BRD4 2 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 102 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 169 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 182 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 83 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 132 bp overlap
CTCF 2 datasets
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 253 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 357 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 274 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 316 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 143 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 130 bp overlap
ESR1 3 datasets
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 178 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 286 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 111 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 441 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 222 bp overlap
FOXA1 2 datasets
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 144 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 421 bp overlap
GATA2 1 dataset
ChIP SK-N-SH ENCFF764OZD 143 bp overlap
GATA3 1 dataset
ChIP T-47D ENCSR000BMX.GATA3.T-47D 98 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 217 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 84 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 216 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 226 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 415 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 240 bp overlap
IRF4 1 dataset
ChIP B-cell GSE142493.IRF4.B-cell 199 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 175 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 287 bp overlap
ChIP SK-N-SH ENCFF285GEQ 228 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 161 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 87 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 69 bp overlap
KMT2A 3 datasets
ChIP MV4-11 GSE83671.KMT2A.MV4-11 218 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 287 bp overlap
ChIP THP-1 GSE83671.KMT2A.THP-1 236 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 159 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 111 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 205 bp overlap
MLLT1_FKB 1 dataset
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 464 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 188 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 389 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 131 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 167 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 153 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
PGR 2 datasets
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 94 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 169 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 85 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 308 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 391 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 216 bp overlap
POLR2A 2 datasets
ChIP spleen ENCFF446ZGT 219 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 276 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 190 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 128 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 430 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 322 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 317 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 417 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 201 bp overlap
SMC1 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 146 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 134 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 117 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 142 bp overlap
SPI1 7 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 356 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 110 bp overlap
ChIP dendrite GSE58864.SPI1.dendrite 206 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 145 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 192 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 188 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 177 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 202 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 197 bp overlap
STAT1 2 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 114 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 126 bp overlap
STAT3 4 datasets
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 205 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 312 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 296 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 227 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 52 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 94 bp overlap
TCF4 2 datasets
ChIP SK-N-SH ENCFF270OWF 169 bp overlap
ChIP SK-N-SH ENCFF270OWF 368 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 127 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 127 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 161 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 452 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 88 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 248 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 118 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 118 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 156 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 92 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 153 bp overlap
ZNF563 1 dataset
ChIP HEK293 GSE76494.ZNF563.HEK293 170 bp overlap
ZNF667 1 dataset
ChIP HEK293 GSE76494.ZNF667.HEK293 170 bp overlap
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