chr5 : 3,597,102 – 3,597,644
542 bp 52 TFs 2 linked genes
This 542 bp open chromatin element is linked to IRX1 and ENSG00000259603 and is bound by 52 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
IRX1 1.3 kb Proximal Proximity
ENSG00000259603 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:3,592,102 – 3,602,644
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 112 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 485 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 542 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 542 bp overlap
BRD2 3 datasets
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 444 bp overlap
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 328 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 287 bp overlap
BRD4 8 datasets
ChIP 402-91 GSE111253.BRD4.402-91 238 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 542 bp overlap
ChIP HCC1395_JQ1 GSE63581.BRD4.HCC1395_JQ1 439 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 142 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 469 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 207 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 458 bp overlap
BRD7 2 datasets
ChIP SUM159PT_DMSO GSE131097.BRD7.SUM159PT_DMSO 217 bp overlap
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 145 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 210 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 315 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 134 bp overlap
CREBBP_M768 1 dataset
ChIP NCI-H3396_E2 GSE32349.CREBBP_M768.NCI-H3396_E2 96 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 401 bp overlap
CTCF 1 dataset
ChIP neural ENCSR822CEA.CTCF.neural 513 bp overlap
EZH2 25 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 531 bp overlap
ChIP A-673 ENCSR179SAO.EZH2.A-673 542 bp overlap
ChIP GM23248 ENCFF506FWX 357 bp overlap
ChIP GM23248 ENCFF506FWX 58 bp overlap
ChIP GM23338 ENCFF613YON 542 bp overlap
ChIP GM23338 ENCFF886DXX 510 bp overlap
ChIP H1 ENCFF232NZA 542 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 431 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 220 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 542 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 89 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 357 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 220 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 302 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 251 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 226 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 159 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 228 bp overlap
ChIP hepatocyte ENCFF118DKH 146 bp overlap
ChIP hepatocyte ENCFF118DKH 107 bp overlap
ChIP hepatocyte ENCFF118DKH 127 bp overlap
ChIP hepatocyte ENCFF552DZB 542 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural progenitor cell ENCFF018MKA 542 bp overlap
ChIP neural progenitor cell ENCFF472NFV 542 bp overlap
EZH2_phosphoT487 1 dataset
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 542 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 132 bp overlap
GATA4 1 dataset
ChIP foregut GSE117136.GATA4.foregut 332 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-2 274 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 396 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 383 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 310 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 383 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 446 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 405 bp overlap
IKZF1 2 datasets
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 188 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 101 bp overlap
JARID2 1 dataset
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 427 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 414 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 365 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 325 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 229 bp overlap
MYC-DAXX 1 dataset
ChIP HEK293_GAL4-DBD GSE107348.MYC-DAXX.HEK293_GAL4-DBD 225 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 321 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 542 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 255 bp overlap
PHF8 1 dataset
ChIP H1 ENCFF427UFV 201 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 114 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 515 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 259 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 339 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 400 bp overlap
RBBP5 1 dataset
ChIP H1 ENCFF905HFL 439 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 542 bp overlap
ChIP H1 ENCFF239FFS 542 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 206 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 269 bp overlap
SIN3A 1 dataset
ChIP PFSK-1 ENCFF218MAY 151 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 435 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 338 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 272 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 339 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 280 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 285 bp overlap
SMARCA4 3 datasets
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 188 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 505 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 290 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 324 bp overlap
SMARCC1 3 datasets
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 79 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 542 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 178 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 312 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 363 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 182 bp overlap
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 260 bp overlap
SUZ12 6 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 297 bp overlap
ChIP H1 ENCFF881NFR 542 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 293 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 542 bp overlap
ChIP NT2/D1 ENCFF574SXS 407 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 186 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 205 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 331 bp overlap
TP53 1 dataset
ChIP GM06170 GSE55727.TP53.GM06170 106 bp overlap
TP63 1 dataset
ChIP JHU-029 GSE88859.TP63.JHU-029 180 bp overlap
YY1 5 datasets
ChIP ALL GSE145549.YY1.ALL 542 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 97 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 542 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 189 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 189 bp overlap
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