chr4 : 153,125,863 153,126,388
525 bp 64 TFs 4 linked genes
This 525 bp open chromatin element is linked to 4 target genes and is bound by 64 transcription factors.
Linked Genes
4 genes
Link type
Gene Expression Dist. to TSS Distance Link type
TRIM2 78.3 kb Distal Multiome
FHDC1 189.8 kb Distal Multiome
MND1 218.6 kb Distal Multiome
ARFIP1 346.2 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:153,120,863 – 153,131,388
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 152 bp overlap
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 240 bp overlap
ARNT 1 dataset
ChIP RCC4 GSE85352.ARNT.RCC4 80 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 201 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 275 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 162 bp overlap
EOMES 5 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 150 bp overlap
ERF::FIGLA 4 datasets
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
Motif DE_24h DE_24h-ERFFIGLA_MA1934.2 13 bp overlap
Motif DE_24h DE_24h-ERFFIGLA_MA1934.2 13 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 247 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 214 bp overlap
ETV5::FIGLA 4 datasets
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_24h DE_24h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_24h DE_24h-ETV5FIGLA_MA1945.2 14 bp overlap
FIGLA 5 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 296 bp overlap
FOS 5 datasets
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 186 bp overlap
ChIP K-562 ENCSR000DKB.FOS.K-562 113 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 110 bp overlap
ChIP MCF-7 ENCFF282FWZ 236 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 212 bp overlap
FOSL2 2 datasets
ChIP A-549 ENCSR448TVS.FOSL2.A-549 182 bp overlap
ChIP LPS141 GSE111253.FOSL2.LPS141 223 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 265 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 451 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 293 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 327 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 362 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 319 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 327 bp overlap
JUNB 3 datasets
ChIP CD4 GSE116695.JUNB.CD4 99 bp overlap
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 112 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 146 bp overlap
JUND 3 datasets
ChIP HepG2 ENCFF869OPW 197 bp overlap
ChIP SK-N-SH ENCFF971JKN 201 bp overlap
ChIP SK-N-SH ENCSR000EIB.JUND.SK-N-SH 118 bp overlap
KLF1 2 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
KLF2 2 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
KLF6 2 datasets
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
Motif DE_24h DE_24h-KLF6_MA1517.2 9 bp overlap
KLF9 2 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
MGA 4 datasets
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
MSC 2 datasets
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
Motif DE_24h DE_24h-MSC_MA0665.1 10 bp overlap
Mecom 1 dataset
Motif DE_24h DE_24h-Mecom_MA0029.2 11 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 132 bp overlap
NHLH2 2 datasets
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
Motif DE_24h DE_24h-NHLH2_MA1529.2 16 bp overlap
Nr2e3 1 dataset
Motif DE_24h DE_24h-Nr2e3_MA0164.2 6 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 383 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 525 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 156 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 243 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 525 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 486 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 394 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 432 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 476 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 441 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 401 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 261 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 248 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 68 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 59 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 140 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 183 bp overlap
SNAI3 1 dataset
Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
TBR1 4 datasets
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
TBX1 4 datasets
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 4 datasets
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX18 4 datasets
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 4 datasets
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
TBX21 4 datasets
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
TBX3 4 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TBX4 4 datasets
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
TBX5 4 datasets
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
Tbx6 4 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
Tcf21 2 datasets
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Motif DE_24h DE_24h-Tcf21_MA0832.2 10 bp overlap
ZEB1 5 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
ZFP42 2 datasets
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
Motif DE_24h DE_24h-ZFP42_MA1651.2 13 bp overlap
ZKSCAN5 2 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_24h DE_24h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF677 1 dataset
Motif DE_24h DE_24h-ZNF677_MA2101.1 12 bp overlap
ZNF816 2 datasets
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
Motif DE_24h DE_24h-ZNF816_MA1719.2 15 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap