chr4 : 140,218,608 140,219,888
1,280 bp 75 TFs 3 linked genes
This 1.3 kb open chromatin element is linked to MAML3, SCOC, and CLGN and is bound by 75 transcription factors.
Linked Genes
3 genes
Link type
Gene Expression Dist. to TSS Distance Link type
MAML3 65.0 kb Distal Multiome+HiCAR
SCOC 154.4 kb Distal Multiome
CLGN 208.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:140,213,608 – 140,224,888
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 116 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 276 bp overlap
Ar 3 datasets
Motif DE_12h DE_12h-Ar_MA0007.4 16 bp overlap
Motif DE_60h DE_60h-Ar_MA0007.4 16 bp overlap
Motif DE_72h DE_72h-Ar_MA0007.4 16 bp overlap
BRD4 2 datasets
ChIP NMC24335 GSE96775.BRD4.NMC24335 292 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 65 bp overlap
CEBPB 1 dataset
ChIP K562 ENCFF584CTB 155 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 218 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 301 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_60h DE_60h-CTCF_MA1929.2 31 bp overlap
Motif DE_72h DE_72h-CTCF_MA1929.2 31 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 313 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 372 bp overlap
ChIP BLaER1 ENCFF093OYK 117 bp overlap
ChIP BLaER1 ENCFF364PUR 300 bp overlap
E2F7 1 dataset
Motif DE_72h DE_72h-E2F7_MA0758.1 14 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 184 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 173 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 777 bp overlap
FERD3L 1 dataset
Motif DE_24h DE_24h-FERD3L_MA1485.1 14 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 1160 bp overlap
ChIP DE DE-FOXA2-2 612 bp overlap
ChIP DE DE-FOXA2-2 429 bp overlap
Foxn1 1 dataset
Motif DE_24h DE_24h-Foxn1_MA1684.1 6 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 921 bp overlap
ChIP DE DE-GATA4-2 813 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 625 bp overlap
ChIP DE DE-GATA6-2 876 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 308 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 291 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 499 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 443 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 423 bp overlap
HAND2 1 dataset
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
HOXB13 1 dataset
Motif DE_72h DE_72h-HOXB13_MA0901.3 9 bp overlap
Hoxa13 1 dataset
Motif DE_72h DE_72h-Hoxa13_MA0650.4 8 bp overlap
IKZF1 1 dataset
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
IRF3 1 dataset
Motif DE_72h DE_72h-IRF3_MA1418.2 17 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 400 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 714 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 265 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 435 bp overlap
KLF1 1 dataset
Motif DE_72h DE_72h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_72h DE_72h-KLF10_MA1511.2 9 bp overlap
KLF13 1 dataset
Motif DE_72h DE_72h-KLF13_MA0657.2 17 bp overlap
KLF14 1 dataset
Motif DE_72h DE_72h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_72h DE_72h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_72h DE_72h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_72h DE_72h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
Motif DE_72h DE_72h-KLF9_MA1107.3 11 bp overlap
MCM5 1 dataset
ChIP K-562 ENCSR628APV.MCM5.K-562 216 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 267 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 257 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 448 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 305 bp overlap
NUTM1 2 datasets
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 351 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 315 bp overlap
Nfat5 1 dataset
Motif DE_72h DE_72h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 1 dataset
Motif DE_72h DE_72h-Nfatc2_MA0152.3 8 bp overlap
PATZ1 1 dataset
Motif DE_72h DE_72h-PATZ1_MA1961.2 11 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 615 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 918 bp overlap
Plagl1 1 dataset
Motif DE_72h DE_72h-Plagl1_MA1615.2 8 bp overlap
Ptf1A 1 dataset
Motif DE_24h DE_24h-Ptf1A_MA1618.2 9 bp overlap
REL 1 dataset
Motif DE_24h DE_24h-REL_MA0101.1 10 bp overlap
RUNX1 1 dataset
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 157 bp overlap
RXRA::VDR 3 datasets
Motif DE_12h DE_12h-RXRAVDR_MA0074.1 15 bp overlap
Motif DE_60h DE_60h-RXRAVDR_MA0074.1 15 bp overlap
Motif DE_72h DE_72h-RXRAVDR_MA0074.1 15 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 495 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 430 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 350 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 613 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 297 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 374 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 178 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 481 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 651 bp overlap
SP3 1 dataset
Motif DE_72h DE_72h-SP3_MA0746.3 11 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 203 bp overlap
TBP 2 datasets
Motif DE_72h DE_72h-TBP_MA0108.3 7 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 127 bp overlap
TWIST1 1 dataset
Motif DE_24h DE_24h-TWIST1_MA1123.3 8 bp overlap
VEZF1 1 dataset
Motif DE_72h DE_72h-VEZF1_MA1578.2 6 bp overlap
Wt1 3 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap
Yy1 1 dataset
Motif DE_72h DE_72h-Yy1_MA0095.4 8 bp overlap
ZBTB18 1 dataset
Motif DE_24h DE_24h-ZBTB18_MA0698.2 11 bp overlap
ZFP42 1 dataset
Motif DE_72h DE_72h-ZFP42_MA1651.2 13 bp overlap
ZIC4 3 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZNF257 1 dataset
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
ZNF320 1 dataset
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 315 bp overlap
ZNF667 3 datasets
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
Motif DE_60h DE_60h-ZNF667_MA1984.2 11 bp overlap
Motif DE_72h DE_72h-ZNF667_MA1984.2 11 bp overlap
ZNF707 2 datasets
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
Motif DE_72h DE_72h-ZNF707_MA1715.1 15 bp overlap
ZNF75A 1 dataset
Motif DE_24h DE_24h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_24h DE_24h-ZNF75D_MA1601.2 12 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap