chr4 : 133,403,934 133,404,474
540 bp 77 TFs 0 linked genes
This 540 bp open chromatin element has no linked target genes and is bound by 77 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:133,398,934 – 133,409,474
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
ATF4 1 dataset
Motif DE_36h DE_36h-ATF4_MA0833.3 10 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 243 bp overlap
ChIP K562 ENCFF673OEZ 411 bp overlap
CEBPG 1 dataset
Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap
CTCF 1 dataset
Motif DE_36h DE_36h-CTCF_MA0139.2 15 bp overlap
Crx 1 dataset
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
DUX4 1 dataset
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
ERG 2 datasets
ChIP SKNO-1 GSE23730.ERG.SKNO-1 155 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 274 bp overlap
FOXA1 1 dataset
Motif DE_36h DE_36h-FOXA1_MA0148.5 8 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 380 bp overlap
ChIP DE DE-FOXA2-2 405 bp overlap
Motif DE_36h DE_36h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_36h DE_36h-FOXA3_MA1683.2 7 bp overlap
FOXD1 1 dataset
Motif DE_36h DE_36h-FOXD1_MA0031.2 7 bp overlap
FOXF2 1 dataset
Motif DE_36h DE_36h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_36h DE_36h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_36h DE_36h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_36h DE_36h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_36h DE_36h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_36h DE_36h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_36h DE_36h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_36h DE_36h-FOXP1_MA0481.4 7 bp overlap
FOXP2 1 dataset
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_36h DE_36h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_36h DE_36h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_36h DE_36h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_36h DE_36h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_36h DE_36h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_36h DE_36h-Foxj3_MA0851.2 9 bp overlap
Foxo1 1 dataset
Motif DE_36h DE_36h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_36h DE_36h-Foxo3_MA0157.4 7 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 164 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 455 bp overlap
ChIP DE DE-GATA4-2 421 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 488 bp overlap
ChIP DE DE-GATA6-2 512 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 453 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 360 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 495 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 496 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 306 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 314 bp overlap
GSC 1 dataset
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
JUN 1 dataset
Motif DE_36h DE_36h-JUN_MA0488.2 10 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 80 bp overlap
NFYA 1 dataset
Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap
OTX1 1 dataset
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
PATZ1 1 dataset
Motif DE_36h DE_36h-PATZ1_MA1961.2 11 bp overlap
PITX1 1 dataset
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
Prdm15 1 dataset
Motif DE_36h DE_36h-Prdm15_MA1616.2 11 bp overlap
RARA 1 dataset
Motif DE_36h DE_36h-RARA_MA0729.1 18 bp overlap
RHOXF1 1 dataset
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
RUNX1 1 dataset
ChIP ME-1 GSE46044.RUNX1.ME-1 168 bp overlap
SMARCA4 1 dataset
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 206 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SPI1 12 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 181 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 285 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 186 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 165 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 178 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 264 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 106 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 131 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 172 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 179 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 193 bp overlap
TAL1 2 datasets
ChIP K-562 GSE107726.TAL1.K-562 291 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 142 bp overlap
TCF12 1 dataset
ChIP ME-1 GSE46044.TCF12.ME-1 140 bp overlap
TFCP2 1 dataset
Motif DE_36h DE_36h-TFCP2_MA1968.2 9 bp overlap
ZBTB33 1 dataset
Motif DE_36h DE_36h-ZBTB33_MA0527.2 10 bp overlap
ZIC1 1 dataset
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZIC5 1 dataset
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZNF143 1 dataset
Motif DE_36h DE_36h-ZNF143_MA0088.2 16 bp overlap
ZNF189 1 dataset
Motif DE_36h DE_36h-ZNF189_MA1725.2 9 bp overlap
ZNF274 1 dataset
Motif DE_36h DE_36h-ZNF274_MA1592.2 12 bp overlap
ZNF281 1 dataset
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ZNF317 1 dataset
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
ZNF320 1 dataset
Motif DE_36h DE_36h-ZNF320_MA1976.2 20 bp overlap
ZNF341 2 datasets
Motif DE_36h DE_36h-ZNF341_MA1655.2 8 bp overlap
Motif DE_36h DE_36h-ZNF341_MA1655.2 8 bp overlap
ZNF677 1 dataset
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
ZNF740 1 dataset
Motif DE_36h DE_36h-ZNF740_MA0753.3 10 bp overlap
ZNF76 1 dataset
Motif DE_36h DE_36h-ZNF76_MA1716.2 17 bp overlap
Zfx 1 dataset
Motif DE_36h DE_36h-Zfx_MA0146.3 10 bp overlap
Zic2 1 dataset
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap