chr4 : 130,576,268 130,577,389
1,121 bp 65 TFs 0 linked genes
This 1.1 kb open chromatin element has no linked target genes and is bound by 65 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:130,571,268 – 130,582,389
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 209 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 205 bp overlap
BRD4 12 datasets
ChIP BE2C GSE80151.BRD4.BE2C 434 bp overlap
ChIP CLB-Ga_Dinaciclib GSE133453.BRD4.CLB-Ga_Dinaciclib 309 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 427 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 403 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 445 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 177 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 358 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 436 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 434 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 440 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 188 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 277 bp overlap
CDK9 1 dataset
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 167 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 229 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 339 bp overlap
CTCFL 1 dataset
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 213 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 264 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 318 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 289 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 119 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 378 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 427 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 373 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 306 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 257 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 915 bp overlap
ChIP DE DE-FOXA2-1 130 bp overlap
ChIP DE DE-FOXA2-2 508 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 236 bp overlap
ChIP SK-N-SH ENCFF764OZD 343 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 370 bp overlap
GATA3 7 datasets
ChIP BE2C GSE65664.GATA3.BE2C 209 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 279 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 435 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 381 bp overlap
ChIP SH-SY5Y ENCFF475HYF 349 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 293 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 469 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 568 bp overlap
ChIP DE DE-GATA4-2 457 bp overlap
ChIP foregut GSE117136.GATA4.foregut 312 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 242 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 290 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 569 bp overlap
ChIP DE DE-GATA6-2 512 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 439 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 623 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 383 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 480 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 429 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 429 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 298 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 405 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 423 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 482 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 519 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 354 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 405 bp overlap
MAFK 1 dataset
ChIP HepG2 ENCFF743ZOF 241 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 373 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 270 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 204 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 371 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 240 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 193 bp overlap
MYCN 5 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 164 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 241 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 383 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 184 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 353 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 185 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 155 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 441 bp overlap
NR3C1 1 dataset
ChIP NALM-6_CASP1 GSE67046.NR3C1.NALM-6_CASP1 175 bp overlap
NR4A1 1 dataset
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 128 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 361 bp overlap
PDX1 2 datasets
ChIP islet ERP001456.PDX1.islet 385 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 290 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 475 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 498 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 403 bp overlap
PPARA 2 datasets
ChIP SK-N-SH ENCFF446HWC 261 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR602QEJ.PPARA.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 402 bp overlap
RAD21 3 datasets
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 267 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 375 bp overlap
RARA 2 datasets
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 214 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 422 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 310 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 278 bp overlap
RFX5 2 datasets
ChIP SK-N-SH ENCFF755HLO 341 bp overlap
ChIP SK-N-SH ENCSR000EHY.RFX5.SK-N-SH 219 bp overlap
SATB1 4 datasets
ChIP MCF-10A GSE123292.SATB1.MCF-10A 85 bp overlap
ChIP MCF-10A_ICRF GSE123292.SATB1.MCF-10A_ICRF 58 bp overlap
ChIP MCF-10A_N-term_CUT1 GSE123292.SATB1.MCF-10A_N-term_CUT1 107 bp overlap
ChIP MCF-10A_dHD GSE123292.SATB1.MCF-10A_dHD 164 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 238 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 514 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 446 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 342 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 367 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 553 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 387 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 167 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 235 bp overlap
SMARCA4 6 datasets
ChIP NGP GSE134626.SMARCA4.NGP 434 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 428 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 126 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 219 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 243 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 384 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 254 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 287 bp overlap
SOX2 5 datasets
ChIP HNSC GSE69479.SOX2.HNSC 403 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 289 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 243 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 351 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 197 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 199 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 404 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 444 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 322 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 295 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 465 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 465 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 146 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 402 bp overlap
TOX2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 194 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 403 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 404 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 397 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 116 bp overlap
ZNF8 1 dataset
ChIP SK-N-SH ENCFF131SMT 331 bp overlap