chr4 : 94,956,976 94,957,310
334 bp 70 TFs 0 linked genes
This 334 bp open chromatin element has no linked target genes and is bound by 70 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:94,951,976 – 94,962,310
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
AR 4 datasets
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 135 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 124 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 234 bp overlap
ChIP prostate_1239_T GSE130408.AR.prostate_1239_T 144 bp overlap
BRD4 1 dataset
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 252 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 152 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 153 bp overlap
EGR1 1 dataset
ChIP fibroblast_DOX-CLOB-24h GSE134924.EGR1.fibroblast_DOX-CLOB-24h 219 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 282 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 124 bp overlap
EZH2 1 dataset
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 186 bp overlap
FOXA1 12 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 323 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 173 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 281 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 262 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 189 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 130 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 334 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 334 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 132 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 185 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 124 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 301 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 334 bp overlap
ChIP DE DE-FOXA2-2 334 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 334 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
GATA3 1 dataset
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 212 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 274 bp overlap
ChIP DE DE-GATA4-2 247 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 331 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 288 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 253 bp overlap
ChIP DE DE-GATA6-2 305 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 334 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 334 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 334 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 246 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 334 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 334 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 220 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 298 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 253 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
HOXB13 8 datasets
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 65 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 183 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 198 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 206 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 174 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 250 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 220 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 152 bp overlap
MAX 5 datasets
ChIP H1 ENCFF914VQY 295 bp overlap
ChIP Ishikawa ENCFF064TDQ 322 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 157 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 224 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 228 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MZF1 4 datasets
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
ChIP HEK293 ENCFF683ZWN 334 bp overlap
ChIP HEK293 ENCFF683ZWN 146 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 319 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 312 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 108 bp overlap
ChIP hESC GSE18292.NANOG.hESC 122 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 296 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 267 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 334 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 256 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 197 bp overlap
SIX2 4 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 334 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 193 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 334 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 152 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 188 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 332 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 334 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 334 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 265 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 321 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 261 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 307 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 222 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 305 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 291 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 255 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 220 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 248 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TP63 1 dataset
ChIP keratinocyte GSE33571.TP63.keratinocyte 59 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 100 bp overlap
YY2 1 dataset
Motif DE_12h DE_12h-YY2_MA0748.3 7 bp overlap
ZIM3 2 datasets
ChIP HEK293 GSE76494.ZIM3.HEK293 142 bp overlap
ChIP HEK293T GSE78099.ZIM3.HEK293T 276 bp overlap
ZKSCAN5 1 dataset
ChIP HEK293T GSE78099.ZKSCAN5.HEK293T 128 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap
ZNF18 3 datasets
ChIP HEK293 ENCFF066NGR 176 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 240 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 136 bp overlap
ZNF211 1 dataset
Motif DE_12h DE_12h-ZNF211_MA1974.2 10 bp overlap
ZNF22 1 dataset
ChIP HEK293 GSE76494.ZNF22.HEK293 235 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 191 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 297 bp overlap
ZNF549 1 dataset
ChIP HEK293 GSE76494.ZNF549.HEK293 157 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 169 bp overlap