chr4 : 81,499,846 81,500,263
417 bp 68 TFs 0 linked genes
This 417 bp open chromatin element has no linked target genes and is bound by 68 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:81,494,846 – 81,505,263
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
ASCL1 2 datasets
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 196 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 142 bp overlap
BRD4 5 datasets
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 311 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 348 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 209 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 337 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 207 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 387 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 175 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 242 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 417 bp overlap
ChIP neural cell ENCFF442QNK 417 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 207 bp overlap
ESR1 2 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 243 bp overlap
ChIP breast_tumor_Female_6 GSE104399.ESR1.breast_tumor_Female_6 202 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 237 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 297 bp overlap
Elf5 1 dataset
Motif DE_24h DE_24h-Elf5_MA0136.4 8 bp overlap
FOXA1 8 datasets
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 132 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 269 bp overlap
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 222 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 131 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 251 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 162 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 305 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 166 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 359 bp overlap
ChIP DE DE-FOXA2-2 373 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 212 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 100 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 266 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 117 bp overlap
HAND2 1 dataset
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
HOXB13 4 datasets
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 219 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 240 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 209 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 274 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 250 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 209 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 240 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 272 bp overlap
KDM5B 2 datasets
ChIP HCC2157 GSE46055.KDM5B.HCC2157 129 bp overlap
ChIP HCC2157 GSE46055.KDM5B.HCC2157 122 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 343 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 317 bp overlap
MEIS1 4 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
ChIP SEM GSE38339.MEIS1.SEM 125 bp overlap
MEIS2 1 dataset
Motif DE_24h DE_24h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_24h DE_24h-MEIS3_MA0775.2 7 bp overlap
MXI1 2 datasets
ChIP neural ENCSR934NHU.MXI1.neural 263 bp overlap
ChIP neural cell ENCFF623HQN 417 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 387 bp overlap
NANOG 3 datasets
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 269 bp overlap
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 203 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 380 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 373 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 262 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 417 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 218 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 307 bp overlap
NEUROG2 3 datasets
Motif DE_24h DE_24h-NEUROG2_MA0669.1 10 bp overlap
Motif DE_24h DE_24h-NEUROG2_MA1642.2 7 bp overlap
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 207 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 227 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 336 bp overlap
Nanog 1 dataset
Motif DE_24h DE_24h-Nanog_MA2339.1 7 bp overlap
PBX3 1 dataset
Motif DE_24h DE_24h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif DE_24h DE_24h-PKNOX1_MA0782.3 10 bp overlap
PKNOX2 1 dataset
Motif DE_24h DE_24h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 417 bp overlap
POU1F1 1 dataset
Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap
POU3F2 1 dataset
Motif DE_24h DE_24h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_24h DE_24h-POU3F3_MA0788.1 13 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 151 bp overlap
POU5F1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 208 bp overlap
PROP1 1 dataset
Motif DE_24h DE_24h-PROP1_MA0715.1 11 bp overlap
Ptf1A 1 dataset
Motif DE_24h DE_24h-Ptf1A_MA1618.2 9 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 417 bp overlap
ChIP neural cell ENCFF564MOT 127 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 417 bp overlap
ChIP neural cell ENCFF882LXX 224 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 110 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 201 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 247 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 325 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 381 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 404 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 417 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 375 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 370 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 334 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 348 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 262 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 260 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 268 bp overlap
SMARCA4 3 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 311 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 333 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 417 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 385 bp overlap
ChIP neural cell ENCFF795YGY 417 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 180 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 187 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 382 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 339 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 145 bp overlap
TGIF1 1 dataset
Motif DE_24h DE_24h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_24h DE_24h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_24h DE_24h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 1 dataset
Motif DE_24h DE_24h-TGIF2LY_MA1572.1 12 bp overlap
TWIST1 1 dataset
Motif DE_24h DE_24h-TWIST1_MA1123.3 8 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 349 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 112 bp overlap
ZNF214 1 dataset
Motif DE_24h DE_24h-ZNF214_MA1975.2 13 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 258 bp overlap
ZNF770 1 dataset
Motif DE_24h DE_24h-ZNF770_MA2099.1 8 bp overlap
ZNF85 1 dataset
Motif DE_24h DE_24h-ZNF85_MA1720.2 12 bp overlap
ZSCAN4 1 dataset
Motif DE_24h DE_24h-ZSCAN4_MA1155.1 15 bp overlap