chr1 : 75,367,020 – 75,367,744

724 bp 87 TFs 0 linked genes

This 724 bp open chromatin element has no linked target genes and is bound by 87 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

87 transcription factors

AR 2 datasets

ChIP A-375_SLNCR GSE116189.AR.A-375_SLNCR 241 bp overlap

ChIP LNCaP GSE63202.AR.LNCaP 202 bp overlap

ARNTL 1 dataset

ChIP U2OS GSE44236.ARNTL.U2OS 152 bp overlap

ATRX 1 dataset

ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 156 bp overlap

BARX1 1 dataset

Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap

BARX2 1 dataset

Motif DE_60h DE_60h-BARX2_MA1471.2 9 bp overlap

BRD4 2 datasets

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 256 bp overlap

ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.BRD4.LNCaP-clone-FGC_DHT-ABBV-744 391 bp overlap

BSX 1 dataset

Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap

CTCF 1 dataset

ChIP GSC23 GSE139416.CTCF.GSC23 425 bp overlap

Crx 1 dataset

Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap

DLX1 1 dataset

Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap

Dlx3 1 dataset

Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap

EED 1 dataset

ChIP ProEs GSE59087.EED.ProEs 169 bp overlap

ELK1::HOXB13 1 dataset

Motif DE_60h DE_60h-ELK1HOXB13_MA1932.2 15 bp overlap

ESR2 1 dataset

Motif DE_60h DE_60h-ESR2_MA0258.2 15 bp overlap

FOXA2 3 datasets

ChIP DE DE-FOXA2-1 540 bp overlap

ChIP DE DE-FOXA2-2 502 bp overlap

Motif DE_60h DE_60h-FOXA2_MA0047.4 8 bp overlap

FOXA3 1 dataset

Motif DE_60h DE_60h-FOXA3_MA1683.2 7 bp overlap

FOXB1 1 dataset

Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap

FOXC1 1 dataset

Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap

FOXC2 1 dataset

Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap

FOXD2 1 dataset

Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap

FOXE1 1 dataset

Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap

FOXI1 1 dataset

Motif DE_60h DE_60h-FOXI1_MA0042.2 7 bp overlap

FOXP1 1 dataset

Motif DE_60h DE_60h-FOXP1_MA0481.4 7 bp overlap

FOXP4 1 dataset

Motif DE_60h DE_60h-FOXP4_MA2117.1 7 bp overlap

Foxq1 1 dataset

Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap

GABPA 2 datasets

ChIP Hep-G2 ENCSR000BJK.GABPA.Hep-G2 113 bp overlap

ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 140 bp overlap

GATA4 4 datasets

ChIP DE DE-GATA4-1 538 bp overlap

ChIP DE DE-GATA4-2 545 bp overlap

Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 335 bp overlap

GATA6 6 datasets

ChIP DE DE-GATA6-1 551 bp overlap

ChIP DE DE-GATA6-2 560 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 387 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 435 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 427 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 393 bp overlap

GBX2 1 dataset

Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap

GSC 1 dataset

Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap

Gfi1B 1 dataset

Motif DE_60h DE_60h-Gfi1B_MA0483.2 10 bp overlap

HDAC2 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 221 bp overlap

HESX1 1 dataset

Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap

Hmx1 1 dataset

Motif DE_60h DE_60h-Hmx1_MA0896.2 9 bp overlap

Hmx2 1 dataset

Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap

Hmx3 1 dataset

Motif DE_60h DE_60h-Hmx3_MA0898.2 9 bp overlap

KDM4C 1 dataset

ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 182 bp overlap

LBX2 1 dataset

Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap

MEIS1 1 dataset

Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap

MSX1 1 dataset

Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap

NFYA 1 dataset

Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap

NFYC 1 dataset

Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap

NKX6-3 1 dataset

Motif DE_60h DE_60h-NKX6-3_MA1530.2 8 bp overlap

NR1I2 1 dataset

Motif DE_60h DE_60h-NR1I2_MA1533.2 15 bp overlap

Nfe2l2 1 dataset

Motif DE_60h DE_60h-Nfe2l2_MA0150.3 11 bp overlap

Nobox 1 dataset

Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap

OTX1 1 dataset

Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap

PAX3-FOXO1 1 dataset

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 127 bp overlap

PITX1 1 dataset

Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap

PITX3 1 dataset

Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap

POU2F2 1 dataset

ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 119 bp overlap

POU5F1 1 dataset

ChIP BG03 GSE21614.POU5F1.BG03 180 bp overlap

Pax7 1 dataset

Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap

RARA::RXRG 1 dataset

Motif DE_60h DE_60h-RARARXRG_MA1149.2 17 bp overlap

RAX 1 dataset

Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap

RHOXF1 1 dataset

Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap

RORA 1 dataset

Motif DE_60h DE_60h-RORA_MA0072.2 11 bp overlap

RUNX3 1 dataset

Motif DE_60h DE_60h-RUNX3_MA0684.3 8 bp overlap

RXRA::VDR 1 dataset

Motif DE_60h DE_60h-RXRAVDR_MA0074.1 15 bp overlap

Rarg 1 dataset

Motif DE_60h DE_60h-Rarg_MA0860.1 17 bp overlap

SETDB1 2 datasets

ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 89 bp overlap

ChIP U2OS ENCSR000EYD.SETDB1.U2OS 89 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 382 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 170 bp overlap

SOX14 1 dataset

Motif DE_60h DE_60h-SOX14_MA1562.2 9 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 634 bp overlap

SOX18 1 dataset

Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap

SRY 1 dataset

Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap

STAT1 1 dataset

ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 163 bp overlap

TEAD1 1 dataset

Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap

TEAD4 1 dataset

Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap

TRIM28 3 datasets

ChIP K-562 ENCSR000EVY.TRIM28.K-562 179 bp overlap

ChIP K562 ENCFF671NCI 202 bp overlap

ChIP K562 ENCFF671NCI 402 bp overlap

VENTX 1 dataset

Motif DE_60h DE_60h-VENTX_MA0724.1 9 bp overlap

ZKSCAN3 1 dataset

Motif DE_60h DE_60h-ZKSCAN3_MA1973.2 14 bp overlap

ZNF143 2 datasets

ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 298 bp overlap

ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 231 bp overlap

ZNF160 1 dataset

ChIP HepG2 ENCFF091XHU 323 bp overlap

ZNF282 1 dataset

Motif DE_60h DE_60h-ZNF282_MA1154.2 15 bp overlap

ZNF3 1 dataset

ChIP K-562 ENCSR195QFV.ZNF3.K-562 292 bp overlap

ZNF331 1 dataset

Motif DE_60h DE_60h-ZNF331_MA1726.2 10 bp overlap

ZNF652 1 dataset

Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap

ZNF816 1 dataset

Motif DE_60h DE_60h-ZNF816_MA1719.2 15 bp overlap