chr4 : 7,007,023 7,007,815
792 bp 59 TFs 5 linked genes
This 792 bp open chromatin element is linked to 5 target genes and is bound by 59 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
GRPEL1 60.7 kb Distal Multiome
TBC1D14 97.6 kb Distal Multiome
KIAA0232 224.7 kb Distal Multiome
BLOC1S4 291.2 kb Distal Multiome
MRFAP1L1 297.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:7,002,023 – 7,012,815
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 231 bp overlap
BRD4 3 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 209 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 236 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 141 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 188 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 95 bp overlap
CTCF 63 datasets
ChIP Caco-2 ENCFF934QYS 217 bp overlap
Motif DE_60h DE_60h-CTCF_MA1930.2 33 bp overlap
ChIP GM10248 ENCFF226VLZ 165 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 461 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 243 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 218 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 197 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 175 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 259 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 205 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 169 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 149 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 105 bp overlap
ChIP HepG2 ENCFF194VBQ 311 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 101 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 151 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 131 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 132 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF400DFR 241 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 170 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 248 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 112 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 242 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 136 bp overlap
ChIP Peyers-patch ENCSR419ANE.CTCF.Peyers-patch 195 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 169 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 141 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 359 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 269 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 149 bp overlap
ChIP U-937 ERP008568.CTCF.U-937 213 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 104 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 282 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 206 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 171 bp overlap
ChIP endodermal cell ENCFF471YCZ 299 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 116 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 220 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 173 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 189 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 190 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 165 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 177 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 177 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 159 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 82 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 159 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 179 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 189 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 134 bp overlap
ChIP neural progenitor cell ENCFF420RBO 152 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 331 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 182 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 323 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 257 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 263 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 160 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 153 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 145 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 302 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap
ESR1 2 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 184 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 102 bp overlap
FOS 2 datasets
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 64 bp overlap
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 210 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 615 bp overlap
ChIP DE DE-FOXA2-2 623 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 171 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 269 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 736 bp overlap
ChIP DE DE-GATA4-2 792 bp overlap
ChIP foregut GSE117136.GATA4.foregut 517 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 407 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 578 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 670 bp overlap
ChIP DE DE-GATA6-2 792 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 635 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 605 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 599 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 642 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 773 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 696 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 739 bp overlap
ChIP foregut GSE117136.GATA6.foregut 466 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 371 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 349 bp overlap
GRHL2 1 dataset
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 136 bp overlap
HAND2 1 dataset
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
HIC2 1 dataset
Motif DE_60h DE_60h-HIC2_MA0738.2 6 bp overlap
HNF4A 2 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 171 bp overlap
ChIP liver ERP002306.HNF4A.liver 167 bp overlap
JUND 1 dataset
ChIP Hep-G2 ENCSR000BGK.JUND.Hep-G2 112 bp overlap
KMT2A 2 datasets
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 140 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 132 bp overlap
NANOG 3 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 321 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 183 bp overlap
NCAPH2 1 dataset
ChIP RMG-I GSE120058.NCAPH2.RMG-I 730 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 118 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 186 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 550 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 93 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 234 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 174 bp overlap
RAD21 15 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 278 bp overlap
ChIP Hep-G2 ERP000209.RAD21.Hep-G2 209 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 198 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 165 bp overlap
ChIP HepG2 ENCFF360ZSW 217 bp overlap
ChIP HepG2 ENCFF906QIS 225 bp overlap
ChIP HepG2 ENCFF963UBJ 257 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 182 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 211 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 160 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 179 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 155 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 152 bp overlap
RBM22 1 dataset
ChIP K-562 GSE120104.RBM22.K-562 204 bp overlap
RELA 1 dataset
ChIP KB GSE52469.RELA.KB 98 bp overlap
REST 1 dataset
Motif DE_60h DE_60h-REST_MA0138.3 20 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 210 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 416 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 792 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 665 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 544 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 352 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 478 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 512 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 673 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 579 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 274 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 135 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 391 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 174 bp overlap
SMC1A 2 datasets
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 176 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 243 bp overlap
SMC3 4 datasets
ChIP Hep-G2 ENCSR000EDW.SMC3.Hep-G2 163 bp overlap
ChIP HepG2 ENCFF745UAV 271 bp overlap
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 174 bp overlap
ChIP K-562 ENCSR000EGW.SMC3.K-562 115 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 247 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 693 bp overlap
SRSF1 1 dataset
ChIP Hep-G2 GSE120104.SRSF1.Hep-G2 208 bp overlap
STAG1 5 datasets
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 221 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 184 bp overlap
ChIP HepG2 ENCFF843EBZ 301 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 187 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 162 bp overlap
TRIM25 1 dataset
ChIP MDA-MB-231 GSE79588.TRIM25.MDA-MB-231 236 bp overlap
YY1 2 datasets
ChIP GM12891 ENCSR000BKJ.YY1.GM12891 115 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 243 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 129 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 97 bp overlap
ZNF263 2 datasets
ChIP K-562 ENCSR000EWN.ZNF263.K-562 190 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 182 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 65 bp overlap