chr1 : 69,077,600 69,078,048
448 bp 61 TFs 0 linked genes
This 448 bp open chromatin element has no linked target genes and is bound by 61 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:69,072,600 – 69,083,048
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE80256.AR.LNCaP 237 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 128 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 107 bp overlap
ATF2 2 datasets
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
Motif ES_0h ES_0h-ATF2_MA1632.2 10 bp overlap
BRD4 1 dataset
ChIP HAP1 GSE108387.BRD4.HAP1 446 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 91 bp overlap
ChIP H1 ENCFF126NLU 93 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 238 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 147 bp overlap
CTCF 11 datasets
ChIP HAP1 GSE152721.CTCF.HAP1 335 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 448 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 227 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 448 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 448 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 448 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 286 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 106 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 263 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 226 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 148 bp overlap
EBF1 1 dataset
Motif ES_0h ES_0h-EBF1_MA0154.5 11 bp overlap
ELK1::SREBF2 2 datasets
Motif DE_12h DE_12h-ELK1SREBF2_MA1933.2 15 bp overlap
Motif ES_0h ES_0h-ELK1SREBF2_MA1933.2 15 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 127 bp overlap
Ebf4 1 dataset
Motif ES_0h ES_0h-Ebf4_MA2122.1 11 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOS::JUN 2 datasets
Motif DE_12h DE_12h-FOSJUN_MA1126.2 10 bp overlap
Motif ES_0h ES_0h-FOSJUN_MA1126.2 10 bp overlap
Foxl2 1 dataset
Motif ES_0h ES_0h-Foxl2_MA1607.2 10 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 279 bp overlap
GATA6 3 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 303 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 322 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 286 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 448 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 190 bp overlap
JUND 3 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
Motif ES_0h ES_0h-JUND_MA0492.2 11 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 94 bp overlap
KLF13 1 dataset
Motif ES_0h ES_0h-KLF13_MA0657.2 17 bp overlap
KLF16 1 dataset
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 334 bp overlap
NANOG 6 datasets
ChIP WA01 ERP004238.NANOG.WA01 134 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 448 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 448 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 241 bp overlap
ChIP hESC GSE18292.NANOG.hESC 109 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NFATC3 1 dataset
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif ES_0h ES_0h-NFATC4_MA1525.3 9 bp overlap
Nfatc1 1 dataset
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
PDX1 3 datasets
ChIP hESC GSE58685.PDX1.hESC 164 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 268 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 258 bp overlap
POU5F1 8 datasets
ChIP GM23338 ENCFF333SNB 187 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 448 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 294 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 448 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 83 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 113 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 106 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 448 bp overlap
PROX1 2 datasets
Motif DE_12h DE_12h-PROX1_MA0794.1 12 bp overlap
Motif ES_0h ES_0h-PROX1_MA0794.1 12 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 371 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 448 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 327 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 51 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 245 bp overlap
RBPJ 3 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RELB 1 dataset
Motif ES_0h ES_0h-RELB_MA1117.2 7 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 177 bp overlap
SMARCA4 5 datasets
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 228 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 188 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 78 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 448 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 448 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 448 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 448 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 179 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 448 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 395 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 210 bp overlap
ChIP hESC GSE18292.SOX2.hESC 116 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 106 bp overlap
SP3 1 dataset
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP8 1 dataset
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SPIB 1 dataset
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 195 bp overlap
SREBF1 6 datasets
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
Motif ES_0h ES_0h-SREBF1_MA0595.1 10 bp overlap
Motif ES_0h ES_0h-SREBF1_MA0595.1 10 bp overlap
Motif ES_0h ES_0h-SREBF1_MA0829.3 10 bp overlap
SREBF2 4 datasets
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
Motif ES_0h ES_0h-SREBF2_MA0596.1 10 bp overlap
Motif ES_0h ES_0h-SREBF2_MA0596.1 10 bp overlap
Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 160 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 279 bp overlap
TEAD2 1 dataset
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
TEAD4 1 dataset
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
TFAP2A 1 dataset
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 1 dataset
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
TP53 2 datasets
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 196 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 223 bp overlap
Thap11 2 datasets
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
VEZF1 1 dataset
Motif ES_0h ES_0h-VEZF1_MA1578.2 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 199 bp overlap
ZKSCAN5 2 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 285 bp overlap
ZSCAN4 2 datasets
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap