chr3 : 192,921,911 – 192,922,143

232 bp 61 TFs 1 linked gene

This 232 bp open chromatin element is linked to MB21D2 and is bound by 61 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
MB21D2		4.1 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

61 transcription factors

CDK8 1 dataset

ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 102 bp overlap

CDX1 1 dataset

Motif ES_0h ES_0h-CDX1_MA0878.3 10 bp overlap

CDX4 1 dataset

Motif ES_0h ES_0h-CDX4_MA1473.2 9 bp overlap

EOMES 1 dataset

Motif ES_0h ES_0h-EOMES_MA0800.2 9 bp overlap

ETV1 1 dataset

ChIP GIST-T1 GSE106624.ETV1.GIST-T1 98 bp overlap

EZH2 1 dataset

ChIP LNCaP GSE39459.EZH2.LNCaP 65 bp overlap

FOS 1 dataset

ChIP leiomyoma_PT886 GSE128230.FOS.leiomyoma_PT886 56 bp overlap

FOXA2 1 dataset

ChIP Caco-2 GSE66218.FOXA2.Caco-2 88 bp overlap

HNF4A 2 datasets

ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 77 bp overlap

ChIP KATO-III GSE114018.HNF4A.KATO-III 88 bp overlap

HOXA10 1 dataset

Motif ES_0h ES_0h-HOXA10_MA0899.2 9 bp overlap

HOXB13 1 dataset

Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap

HOXD9 1 dataset

Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap

Hmga1 1 dataset

Motif ES_0h ES_0h-Hmga1_MA2124.1 8 bp overlap

Hoxa13 1 dataset

Motif ES_0h ES_0h-Hoxa13_MA0650.4 8 bp overlap

ISL2 1 dataset

Motif ES_0h ES_0h-ISL2_MA0914.2 6 bp overlap

JUN 1 dataset

ChIP leiomyoma_PT886 GSE128230.JUN.leiomyoma_PT886 110 bp overlap

Lhx3 1 dataset

Motif ES_0h ES_0h-Lhx3_MA0135.2 12 bp overlap

MAFF 1 dataset

Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap

MED12 1 dataset

ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 76 bp overlap

MEIS1 1 dataset

Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap

MEIS2 1 dataset

Motif ES_0h ES_0h-MEIS2_MA0774.1 8 bp overlap

MGA 1 dataset

Motif ES_0h ES_0h-MGA_MA0801.1 8 bp overlap

MXI1 1 dataset

Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap

MYF6 1 dataset

Motif ES_0h ES_0h-MYF6_MA0667.1 10 bp overlap

NANOG 5 datasets

ChIP GM23338 ENCFF065NZG 232 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 232 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 213 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 221 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 232 bp overlap

NFATC3 1 dataset

Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap

NIPBL 2 datasets

ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 183 bp overlap

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 215 bp overlap

NR6A1 1 dataset

Motif ES_0h ES_0h-NR6A1_MA1541.2 14 bp overlap

Nfatc1 1 dataset

Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap

PHOX2A 1 dataset

Motif ES_0h ES_0h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

Motif ES_0h ES_0h-PHOX2B_MA0681.3 12 bp overlap

POLR2A 1 dataset

ChIP sigmoid colon ENCFF754JQR 131 bp overlap

POU1F1 1 dataset

Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap

POU2F1 1 dataset

Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap

POU2F1::SOX2 1 dataset

Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap

POU2F2 1 dataset

Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap

POU3F1 1 dataset

Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap

POU3F4 1 dataset

Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap

POU5F1 7 datasets

ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 131 bp overlap

ChIP GM23338 ENCFF333SNB 232 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 232 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 232 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 232 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 201 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 232 bp overlap

POU5F1B 1 dataset

Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap

PRDM10 1 dataset

ChIP HEK293 ENCFF145WQQ 182 bp overlap

PROP1 1 dataset

Motif ES_0h ES_0h-PROP1_MA0715.1 11 bp overlap

PROX1 1 dataset

Motif ES_0h ES_0h-PROX1_MA0794.1 12 bp overlap

Pou5f1::Sox2 1 dataset

Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap

Prdm5 1 dataset

Motif ES_0h ES_0h-Prdm5_MA1999.2 11 bp overlap

SATB1 1 dataset

Motif ES_0h ES_0h-SATB1_MA1963.2 7 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 160 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 232 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 196 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 232 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 174 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 232 bp overlap

TBR1 1 dataset

Motif ES_0h ES_0h-TBR1_MA0802.2 9 bp overlap

TBX1 1 dataset

Motif ES_0h ES_0h-TBX1_MA0805.1 8 bp overlap

TBX15 1 dataset

Motif ES_0h ES_0h-TBX15_MA0803.1 8 bp overlap

TBX4 1 dataset

Motif ES_0h ES_0h-TBX4_MA0806.1 8 bp overlap

THAP1 1 dataset

Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap

TP53 1 dataset

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 220 bp overlap

Tcf21 1 dataset

Motif ES_0h ES_0h-Tcf21_MA0832.2 10 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 187 bp overlap

ZNF140 1 dataset

Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap