chr3 : 189,813,872 – 189,814,207
335 bp 45 TFs 0 linked genes
This 335 bp open chromatin element has no linked target genes and is bound by 45 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:189,808,872 – 189,819,207
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
AR 6 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 133 bp overlap
ChIP VCaP GSE83650.AR.VCaP 231 bp overlap
ChIP VCaP GSE98809.AR.VCaP 231 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 179 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 108 bp overlap
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 326 bp overlap
Ar 1 dataset
Motif DE_12h DE_12h-Ar_MA0007.4 16 bp overlap
BRD4 3 datasets
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 292 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 335 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 238 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 155 bp overlap
EBF1 1 dataset
ChIP ASC GSE54889.EBF1.ASC 131 bp overlap
EP300 4 datasets
ChIP H1 ENCFF937OPV 205 bp overlap
ChIP Ishikawa ENCFF364ZWT 189 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 171 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 261 bp overlap
ERG 3 datasets
ChIP SKNO-1 GSE23730.ERG.SKNO-1 222 bp overlap
ChIP VCaP GSE83650.ERG.VCaP 219 bp overlap
ChIP VCaP GSE98809.ERG.VCaP 219 bp overlap
ESR1 29 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 167 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 74 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 124 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 209 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 150 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 218 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 71 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 123 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 335 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 248 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 270 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 178 bp overlap
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 117 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 335 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 335 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 335 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 178 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 132 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 158 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 99 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 335 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 335 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 335 bp overlap
ChIP MCF-7 ERP000209.ESR1.MCF-7 117 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
ChIP MCF-7_TAMR_E2 GSE86538.ESR1.MCF-7_TAMR_E2 113 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 275 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 188 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 242 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 227 bp overlap
EZH2 1 dataset
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 94 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 279 bp overlap
FOXM1 1 dataset
ChIP Ishikawa ENCFF578VDD 209 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 269 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCFF064TDQ 96 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 155 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 168 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 174 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 130 bp overlap
NR3C1 11 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 202 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 104 bp overlap
Motif DE_12h DE_12h-NR3C1_MA0113.4 15 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 335 bp overlap
ChIP Ishikawa_Dex GSE109891.NR3C1.Ishikawa_Dex 249 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.NR3C1.Ishikawa_Dex_E2 112 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 131 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 132 bp overlap
ChIP T-47D GSE126859.NR3C1.T-47D 173 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 335 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 79 bp overlap
NR3C2 1 dataset
Motif DE_12h DE_12h-NR3C2_MA0727.2 15 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 168 bp overlap
ONECUT2 1 dataset
Motif DE_12h DE_12h-ONECUT2_MA0756.3 8 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 214 bp overlap
PGR 1 dataset
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 261 bp overlap
POLR2A 1 dataset
ChIP gastrocnemius medialis ENCFF145VIB 265 bp overlap
RAD21 1 dataset
ChIP Ishikawa ENCFF570JVV 192 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 330 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 158 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 335 bp overlap
SMARCA4 1 dataset
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 157 bp overlap
SOX9 1 dataset
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 211 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Spz1 1 dataset
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 217 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 96 bp overlap
TEAD4 2 datasets
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 120 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 190 bp overlap
YY1 2 datasets
ChIP Ishikawa ENCFF505XQX 246 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 138 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF341 3 datasets
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ChIP HEK293 ENCFF944VMC 335 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 322 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF682 1 dataset
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
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