chr3 : 150,194,563 – 150,194,989
426 bp 107 TFs 0 linked genes
This 426 bp open chromatin element has no linked target genes and is bound by 107 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:150,189,563 – 150,199,989
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
107 transcription factors
Source
Cell type
AR 2 datasets
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 426 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 108 bp overlap
ATOH7 2 datasets
Motif DE_36h DE_36h-ATOH7_MA1468.1 10 bp overlap
Motif DE_48h DE_48h-ATOH7_MA1468.1 10 bp overlap
Ascl2 2 datasets
Motif DE_36h DE_36h-Ascl2_MA0816.1 10 bp overlap
Motif DE_48h DE_48h-Ascl2_MA0816.1 10 bp overlap
BARX1 2 datasets
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BARX2 2 datasets
Motif DE_36h DE_36h-BARX2_MA1471.2 9 bp overlap
Motif DE_48h DE_48h-BARX2_MA1471.2 9 bp overlap
BHLHE41 3 datasets
Motif DE_24h DE_24h-BHLHE41_MA0636.1 10 bp overlap
Motif DE_36h DE_36h-BHLHE41_MA0636.1 10 bp overlap
Motif DE_48h DE_48h-BHLHE41_MA0636.1 10 bp overlap
BSX 2 datasets
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
CTCF 1 dataset
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
Crx 1 dataset
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
DLX1 2 datasets
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 2 datasets
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
DMRTA1 2 datasets
Motif DE_36h DE_36h-DMRTA1_MA1707.2 10 bp overlap
Motif DE_48h DE_48h-DMRTA1_MA1707.2 10 bp overlap
DUX4 3 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
ChIP HEK293 GSE75791.DUX4.HEK293 299 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 284 bp overlap
DUXA 1 dataset
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
Dlx3 2 datasets
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 2 datasets
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
Dux 1 dataset
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
ELF1 2 datasets
Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap
Motif DE_48h DE_48h-ELF1_MA0473.4 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 426 bp overlap
ETV5::FIGLA 2 datasets
Motif DE_36h DE_36h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_48h DE_48h-ETV5FIGLA_MA1945.2 14 bp overlap
EWSR1-FLI1 3 datasets
Motif DE_24h DE_24h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_36h DE_36h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_48h DE_48h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 426 bp overlap
ChIP DE DE-FOXA2-2 426 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 280 bp overlap
GATA1::TAL1 1 dataset
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 426 bp overlap
ChIP DE DE-GATA4-2 426 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 406 bp overlap
ChIP DE DE-GATA6-2 426 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 426 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 426 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 426 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 426 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 426 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 426 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 404 bp overlap
GBX2 2 datasets
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
GCM1 2 datasets
Motif DE_36h DE_36h-GCM1_MA0646.2 10 bp overlap
Motif DE_48h DE_48h-GCM1_MA0646.2 10 bp overlap
GLI3 2 datasets
Motif DE_36h DE_36h-GLI3_MA1491.3 15 bp overlap
Motif DE_48h DE_48h-GLI3_MA1491.3 15 bp overlap
GSC 1 dataset
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
HAND2 2 datasets
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
HESX1 2 datasets
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HOXA7 2 datasets
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
IKZF2 2 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
ISL2 2 datasets
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
Irf1 2 datasets
Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap
Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 426 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 426 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 426 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 309 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 426 bp overlap
KLF17 1 dataset
Motif DE_36h DE_36h-KLF17_MA1514.2 14 bp overlap
LBX2 2 datasets
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LHX2 2 datasets
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
MEIS1 3 datasets
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MITF 7 datasets
ChIP 501-mel GSE137522.MITF.501-mel 384 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 251 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 356 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 294 bp overlap
Motif DE_24h DE_24h-MITF_MA0620.4 10 bp overlap
Motif DE_36h DE_36h-MITF_MA0620.4 10 bp overlap
Motif DE_48h DE_48h-MITF_MA0620.4 10 bp overlap
MSX1 2 datasets
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 2 datasets
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
MXI1 3 datasets
Motif DE_24h DE_24h-MXI1_MA1108.3 6 bp overlap
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
Msx3 2 datasets
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
NEUROG2 4 datasets
Motif DE_36h DE_36h-NEUROG2_MA0669.1 10 bp overlap
Motif DE_36h DE_36h-NEUROG2_MA1642.2 7 bp overlap
Motif DE_48h DE_48h-NEUROG2_MA0669.1 10 bp overlap
Motif DE_48h DE_48h-NEUROG2_MA1642.2 7 bp overlap
NFIA 1 dataset
Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap
NFIB 2 datasets
Motif DE_36h DE_36h-NFIB_MA1643.2 17 bp overlap
Motif DE_48h DE_48h-NFIB_MA1643.2 17 bp overlap
NFIC 2 datasets
Motif DE_36h DE_36h-NFIC_MA1527.2 15 bp overlap
Motif DE_48h DE_48h-NFIC_MA1527.2 15 bp overlap
NFIC::TLX1 2 datasets
Motif DE_36h DE_36h-NFICTLX1_MA0119.1 14 bp overlap
Motif DE_48h DE_48h-NFICTLX1_MA0119.1 14 bp overlap
NFIX 3 datasets
Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap
Motif DE_36h DE_36h-NFIX_MA1528.2 14 bp overlap
Motif DE_48h DE_48h-NFIX_MA1528.2 14 bp overlap
NFYA 1 dataset
Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap
Nfe2l2 1 dataset
Motif DE_36h DE_36h-Nfe2l2_MA0150.3 11 bp overlap
Nobox 2 datasets
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
OTX1 1 dataset
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 166 bp overlap
PAX6 1 dataset
Motif DE_36h DE_36h-PAX6_MA0069.1 14 bp overlap
PBX1 3 datasets
Motif DE_36h DE_36h-PBX1_MA0070.2 9 bp overlap
Motif DE_36h DE_36h-PBX1_MA0070.2 9 bp overlap
Motif DE_48h DE_48h-PBX1_MA0070.2 9 bp overlap
PHOX2A 1 dataset
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
PITX1 1 dataset
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
PRDM9 3 datasets
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
PROP1 1 dataset
Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap
Prdm4 2 datasets
Motif DE_36h DE_36h-Prdm4_MA1647.3 11 bp overlap
Motif DE_48h DE_48h-Prdm4_MA1647.3 11 bp overlap
Prdm5 2 datasets
Motif DE_36h DE_36h-Prdm5_MA1999.2 11 bp overlap
Motif DE_48h DE_48h-Prdm5_MA1999.2 11 bp overlap
Ptf1A 2 datasets
Motif DE_36h DE_36h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_48h DE_48h-Ptf1A_MA1618.2 9 bp overlap
RAX 2 datasets
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 426 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 426 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 426 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 426 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 426 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 426 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 406 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 426 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 426 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 412 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 397 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 392 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 408 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SREBF2 3 datasets
Motif DE_24h DE_24h-SREBF2_MA0828.3 10 bp overlap
Motif DE_36h DE_36h-SREBF2_MA0828.3 10 bp overlap
Motif DE_48h DE_48h-SREBF2_MA0828.3 10 bp overlap
SRY 2 datasets
Motif DE_36h DE_36h-SRY_MA0084.2 7 bp overlap
Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 253 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 247 bp overlap
TAL1::TCF3 2 datasets
Motif DE_36h DE_36h-TAL1TCF3_MA0091.2 10 bp overlap
Motif DE_48h DE_48h-TAL1TCF3_MA0091.2 10 bp overlap
TFAP2A 2 datasets
Motif DE_36h DE_36h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_48h DE_48h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 2 datasets
Motif DE_36h DE_36h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_48h DE_48h-TFAP2C_MA0814.3 9 bp overlap
TFE3 4 datasets
Motif DE_24h DE_24h-TFE3_MA0831.3 10 bp overlap
Motif DE_36h DE_36h-TFE3_MA0831.3 10 bp overlap
Motif DE_48h DE_48h-TFE3_MA0831.3 10 bp overlap
ChIP K562 ENCFF697ABG 278 bp overlap
TFEB 3 datasets
Motif DE_24h DE_24h-TFEB_MA0692.2 8 bp overlap
Motif DE_36h DE_36h-TFEB_MA0692.2 8 bp overlap
Motif DE_48h DE_48h-TFEB_MA0692.2 8 bp overlap
TFEC 3 datasets
Motif DE_24h DE_24h-TFEC_MA0871.3 8 bp overlap
Motif DE_36h DE_36h-TFEC_MA0871.3 8 bp overlap
Motif DE_48h DE_48h-TFEC_MA0871.3 8 bp overlap
THRB 3 datasets
Motif DE_24h DE_24h-THRB_MA1576.2 18 bp overlap
Motif DE_36h DE_36h-THRB_MA1576.2 18 bp overlap
Motif DE_48h DE_48h-THRB_MA1576.2 18 bp overlap
TWIST1 2 datasets
Motif DE_36h DE_36h-TWIST1_MA1123.3 8 bp overlap
Motif DE_48h DE_48h-TWIST1_MA1123.3 8 bp overlap
USF1 6 datasets
Motif DE_24h DE_24h-USF1_MA0093.4 10 bp overlap
Motif DE_36h DE_36h-USF1_MA0093.4 10 bp overlap
Motif DE_48h DE_48h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 62 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 252 bp overlap
ChIP WTC11 ENCFF699QGS 344 bp overlap
USF2 4 datasets
Motif DE_24h DE_24h-USF2_MA0526.5 10 bp overlap
Motif DE_36h DE_36h-USF2_MA0526.5 10 bp overlap
Motif DE_48h DE_48h-USF2_MA0526.5 10 bp overlap
ChIP WTC11 ENCFF139JAW 323 bp overlap
Vdr 2 datasets
Motif DE_36h DE_36h-Vdr_MA0693.4 7 bp overlap
Motif DE_48h DE_48h-Vdr_MA0693.4 7 bp overlap
ZBTB18 2 datasets
Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_48h DE_48h-ZBTB18_MA0698.2 11 bp overlap
ZFP42 2 datasets
Motif DE_36h DE_36h-ZFP42_MA1651.2 13 bp overlap
Motif DE_48h DE_48h-ZFP42_MA1651.2 13 bp overlap
ZKSCAN3 1 dataset
Motif DE_48h DE_48h-ZKSCAN3_MA1973.2 14 bp overlap
ZKSCAN5 1 dataset
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF143 1 dataset
Motif DE_36h DE_36h-ZNF143_MA0088.2 16 bp overlap
ZNF24 1 dataset
Motif DE_36h DE_36h-ZNF24_MA1124.1 13 bp overlap
ZNF274 2 datasets
Motif DE_36h DE_36h-ZNF274_MA1592.2 12 bp overlap
Motif DE_48h DE_48h-ZNF274_MA1592.2 12 bp overlap
ZNF454 1 dataset
Motif DE_48h DE_48h-ZNF454_MA1712.2 17 bp overlap
ZNF610 1 dataset
Motif DE_36h DE_36h-ZNF610_MA1713.2 10 bp overlap
ZNF701 3 datasets
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap
ZNF816 1 dataset
Motif DE_36h DE_36h-ZNF816_MA1719.2 15 bp overlap
ZSCAN4 2 datasets
Motif DE_36h DE_36h-ZSCAN4_MA1155.1 15 bp overlap
Motif DE_48h DE_48h-ZSCAN4_MA1155.1 15 bp overlap
Zic1::Zic2 1 dataset
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
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