chr1 : 65,340,950 – 65,342,051
1,101 bp 108 TFs 0 linked genes
This 1.1 kb open chromatin element has no linked target genes and is bound by 108 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:65,335,950 – 65,347,051
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
ASCL1 4 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 136 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 203 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 230 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 262 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 594 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 523 bp overlap
ATOH7 2 datasets
Motif DE_48h DE_48h-ATOH7_MA1468.1 10 bp overlap
Motif DE_60h DE_60h-ATOH7_MA1468.1 10 bp overlap
Ascl2 2 datasets
Motif DE_48h DE_48h-Ascl2_MA0816.1 10 bp overlap
Motif DE_60h DE_60h-Ascl2_MA0816.1 10 bp overlap
BCL11A 2 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 60 bp overlap
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 57 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 217 bp overlap
BRD4 6 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 114 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 191 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 444 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 729 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 860 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 920 bp overlap
Bcl11B 1 dataset
Motif DE_60h DE_60h-Bcl11B_MA1989.2 9 bp overlap
CBFA2T3 1 dataset
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 325 bp overlap
CEBPA 1 dataset
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 174 bp overlap
CEBPB 6 datasets
ChIP H1 ENCFF871PTR 249 bp overlap
ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 154 bp overlap
ChIP Hep-G2 ENCSR000BQI.CEBPB.Hep-G2 138 bp overlap
ChIP HepG2 ENCFF536NTI 164 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 136 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 146 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 398 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 182 bp overlap
EOMES 2 datasets
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 293 bp overlap
ERG 1 dataset
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 71 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 274 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOSL1::JUNB 2 datasets
Motif DE_48h DE_48h-FOSL1JUNB_MA1137.2 9 bp overlap
Motif DE_60h DE_60h-FOSL1JUNB_MA1137.2 9 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 589 bp overlap
ChIP DE DE-FOXA2-2 576 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 178 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 799 bp overlap
ChIP DE DE-GATA4-2 685 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 186 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 813 bp overlap
ChIP DE DE-GATA6-2 669 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 447 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 263 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 539 bp overlap
ChIP foregut GSE117136.GATA6.foregut 290 bp overlap
GFI1 1 dataset
Motif DE_60h DE_60h-GFI1_MA0038.3 11 bp overlap
Gfi1B 1 dataset
Motif DE_60h DE_60h-Gfi1B_MA0483.2 10 bp overlap
HAND2 2 datasets
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 235 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 197 bp overlap
ChIP HepG2 ENCFF854JLR 214 bp overlap
HNF1B 2 datasets
Motif DE_48h DE_48h-HNF1B_MA0153.2 13 bp overlap
Motif DE_60h DE_60h-HNF1B_MA0153.2 13 bp overlap
HOXA3 2 datasets
Motif DE_48h DE_48h-HOXA3_MA2119.1 7 bp overlap
Motif DE_60h DE_60h-HOXA3_MA2119.1 7 bp overlap
HOXA4 2 datasets
Motif DE_48h DE_48h-HOXA4_MA1496.2 7 bp overlap
Motif DE_60h DE_60h-HOXA4_MA1496.2 7 bp overlap
HOXA5 2 datasets
Motif DE_48h DE_48h-HOXA5_MA0158.2 8 bp overlap
Motif DE_60h DE_60h-HOXA5_MA0158.2 8 bp overlap
HOXB4 2 datasets
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXC4 2 datasets
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXD3 2 datasets
Motif DE_48h DE_48h-HOXD3_MA0912.2 8 bp overlap
Motif DE_60h DE_60h-HOXD3_MA0912.2 8 bp overlap
HOXD4 2 datasets
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
JDP2 2 datasets
Motif DE_48h DE_48h-JDP2_MA0655.1 9 bp overlap
Motif DE_60h DE_60h-JDP2_MA0655.1 9 bp overlap
JUN::JUNB 2 datasets
Motif DE_48h DE_48h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_60h DE_60h-JUNJUNB_MA1132.2 8 bp overlap
JUNB 2 datasets
Motif DE_48h DE_48h-JUNB_MA0490.3 9 bp overlap
Motif DE_60h DE_60h-JUNB_MA0490.3 9 bp overlap
JUND 2 datasets
Motif DE_48h DE_48h-JUND_MA0491.3 9 bp overlap
Motif DE_60h DE_60h-JUND_MA0491.3 9 bp overlap
KLF13 1 dataset
Motif DE_60h DE_60h-KLF13_MA0657.2 17 bp overlap
MAF::NFE2 2 datasets
Motif DE_48h DE_48h-MAFNFE2_MA0501.2 11 bp overlap
Motif DE_60h DE_60h-MAFNFE2_MA0501.2 11 bp overlap
MAFF 1 dataset
Motif DE_60h DE_60h-MAFF_MA0495.4 11 bp overlap
MAFG::NFE2L1 2 datasets
Motif DE_48h DE_48h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_60h DE_60h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 538 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
MYOD1 1 dataset
Motif DE_60h DE_60h-MYOD1_MA0499.3 9 bp overlap
NEUROD1 2 datasets
Motif DE_48h DE_48h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_60h DE_60h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 2 datasets
Motif DE_48h DE_48h-NEUROG2_MA0669.1 10 bp overlap
Motif DE_60h DE_60h-NEUROG2_MA0669.1 10 bp overlap
NFATC3 1 dataset
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NFE2 2 datasets
Motif DE_48h DE_48h-NFE2_MA0841.2 10 bp overlap
Motif DE_60h DE_60h-NFE2_MA0841.2 10 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 280 bp overlap
NFIB 1 dataset
Motif DE_60h DE_60h-NFIB_MA1643.2 17 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 318 bp overlap
ChIP K562 ENCFF167YID 180 bp overlap
NFIX 1 dataset
Motif DE_60h DE_60h-NFIX_MA1528.2 14 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 152 bp overlap
NR2F6 1 dataset
ChIP K-562 ENCSR707QWA.NR2F6.K-562 198 bp overlap
NRL 1 dataset
Motif DE_60h DE_60h-NRL_MA0842.3 12 bp overlap
Neurod2 2 datasets
Motif DE_48h DE_48h-Neurod2_MA0668.3 8 bp overlap
Motif DE_60h DE_60h-Neurod2_MA0668.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Nfe2l2 2 datasets
Motif DE_48h DE_48h-Nfe2l2_MA0150.3 11 bp overlap
Motif DE_60h DE_60h-Nfe2l2_MA0150.3 11 bp overlap
Nr2e1 2 datasets
Motif DE_48h DE_48h-Nr2e1_MA0676.1 9 bp overlap
Motif DE_60h DE_60h-Nr2e1_MA0676.1 9 bp overlap
OLIG1 2 datasets
Motif DE_48h DE_48h-OLIG1_MA0826.1 10 bp overlap
Motif DE_60h DE_60h-OLIG1_MA0826.1 10 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_60h DE_60h-POU2F1SOX2_MA1962.1 17 bp overlap
Ptf1A 3 datasets
Motif DE_48h DE_48h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_60h DE_60h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_60h DE_60h-Ptf1A_MA1620.2 8 bp overlap
RARB 1 dataset
Motif DE_60h DE_60h-RARB_MA1552.2 13 bp overlap
RARG 1 dataset
Motif DE_60h DE_60h-RARG_MA1553.2 13 bp overlap
REST 2 datasets
ChIP K-562 ENCSR000ATM.REST.K-562 414 bp overlap
ChIP LNCaP GSE119385.REST.LNCaP 327 bp overlap
RXRB 1 dataset
Motif DE_60h DE_60h-RXRB_MA1555.1 14 bp overlap
RXRG 1 dataset
Motif DE_60h DE_60h-RXRG_MA1556.1 14 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 162 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 656 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 286 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 571 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 442 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 188 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 148 bp overlap
SNAI2 1 dataset
Motif DE_60h DE_60h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap
SOX10 1 dataset
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX13 1 dataset
Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 631 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 883 bp overlap
SOX2 1 dataset
Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 237 bp overlap
ChIP K562 ENCFF059YCJ 437 bp overlap
Six3 1 dataset
Motif DE_60h DE_60h-Six3_MA0631.2 11 bp overlap
Sox17 1 dataset
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
TAL1 5 datasets
ChIP K-562 GSE107726.TAL1.K-562 171 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 159 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 190 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 207 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 117 bp overlap
TAL1::TCF3 2 datasets
Motif DE_48h DE_48h-TAL1TCF3_MA0091.2 10 bp overlap
Motif DE_60h DE_60h-TAL1TCF3_MA0091.2 10 bp overlap
TBR1 1 dataset
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX18 1 dataset
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX5 2 datasets
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 248 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 311 bp overlap
TCF4 1 dataset
Motif DE_60h DE_60h-TCF4_MA0830.3 8 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 216 bp overlap
Tbx6 1 dataset
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
ZEB1 1 dataset
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 241 bp overlap
ZNF317 1 dataset
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 63 bp overlap
ZNF549 1 dataset
Motif DE_60h DE_60h-ZNF549_MA1728.2 8 bp overlap
ZNF680 1 dataset
Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap
ZNF75A 1 dataset
Motif DE_60h DE_60h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_60h DE_60h-ZNF75D_MA1601.2 12 bp overlap
Huangfu Lab · Publications · Resources · Contact