chr3 : 148,280,501 – 148,281,084
583 bp 86 TFs 1 linked gene
This 583 bp open chromatin element is linked to LINC02046 and is bound by 86 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02046 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:148,275,501 – 148,286,084
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Ahr::Arnt 3 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
BRCA1 1 dataset
ChIP SH-EP_pWZL-MYCNwt GSE111905.BRCA1.SH-EP_pWZL-MYCNwt 103 bp overlap
BRD2 1 dataset
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 190 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 289 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 209 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 410 bp overlap
ChIP BLaER1 ENCFF364PUR 329 bp overlap
E2F3 2 datasets
ChIP K-562 ENCSR036QIR.E2F3.K-562 227 bp overlap
ChIP K562 ENCFF922ILX 331 bp overlap
E2F6 6 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 174 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 167 bp overlap
ChIP K562 ENCFF136LTS 190 bp overlap
ChIP K562 ENCFF163WMT 416 bp overlap
E2F8 2 datasets
Motif DE_12h DE_12h-E2F8_MA0865.3 9 bp overlap
Motif DE_12h DE_12h-E2F8_MA0865.3 9 bp overlap
EGR1 2 datasets
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
EGR3 1 dataset
Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap
EGR4 2 datasets
Motif DE_12h DE_12h-EGR4_MA0733.2 11 bp overlap
Motif DE_12h DE_12h-EGR4_MA0733.2 11 bp overlap
ELF1 2 datasets
ChIP K-562 ENCSR000BMD.ELF1.K-562 200 bp overlap
ChIP K562 ENCFF496AKI 75 bp overlap
ELF2 1 dataset
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
ELF4 1 dataset
Motif DE_12h DE_12h-ELF4_MA0641.1 12 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 220 bp overlap
ESR1 1 dataset
ChIP Ishikawa GSE99905.ESR1.Ishikawa 232 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 307 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF11 2 datasets
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF13 2 datasets
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
KLF16 2 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF3 1 dataset
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF6 1 dataset
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
KLF9 3 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 100 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 296 bp overlap
ChIP K562 ENCFF320EQC 189 bp overlap
MAZ 1 dataset
ChIP K562 ENCFF982GSZ 426 bp overlap
MGA 2 datasets
ChIP K-562 ENCSR710WLO.MGA.K-562 279 bp overlap
ChIP K562 ENCFF140CEX 212 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MTF1 1 dataset
Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 183 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 152 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 325 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 343 bp overlap
NRF1 10 datasets
ChIP K-562 ENCSR837EYC.NRF1.K-562 187 bp overlap
ChIP K-562 ENCSR998AJK.NRF1.K-562 313 bp overlap
ChIP K-562 ENCSR494TDU.NRF1.K-562 306 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 155 bp overlap
ChIP K-562_Ab_R157-1-3H1 GSE97661.NRF1.K-562_Ab_R157-1-3H1 94 bp overlap
ChIP K-562_Ab_R157-1-3H3 GSE97661.NRF1.K-562_Ab_R157-1-3H3 171 bp overlap
ChIP K562 ENCFF130SGK 246 bp overlap
ChIP K562 ENCFF689EWI 541 bp overlap
ChIP K562 ENCFF791UHF 495 bp overlap
ChIP T-47D_HAEGIN2 GSE59935.NRF1.T-47D_HAEGIN2 243 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Nrf1 2 datasets
Motif DE_12h DE_12h-Nrf1_MA0506.3 12 bp overlap
Motif ES_0h ES_0h-Nrf1_MA0506.3 12 bp overlap
OGG1 1 dataset
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 289 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PHF8 2 datasets
ChIP K-562 ENCSR000AQH.PHF8.K-562 164 bp overlap
ChIP K562 ENCFF217UCA 367 bp overlap
POLR2G 1 dataset
ChIP K562 ENCFF047BLG 330 bp overlap
POU5F1 1 dataset
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 193 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 383 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 480 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 528 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 198 bp overlap
SP3 2 datasets
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
SPDEF 1 dataset
Motif DE_12h DE_12h-SPDEF_MA0686.2 10 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 453 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 431 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 316 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
TFDP1 2 datasets
Motif DE_12h DE_12h-TFDP1_MA1122.2 8 bp overlap
ChIP K562 ENCFF584VSB 501 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 465 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZBED4 1 dataset
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 583 bp overlap
ZNF213 2 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF682 2 datasets
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Znf423 2 datasets
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap
Motif ES_0h ES_0h-Znf423_MA0116.1 15 bp overlap
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