chr3 : 147,407,129 147,407,537
408 bp 55 TFs 1 linked gene
This 408 bp open chromatin element is linked to ZIC4 and is bound by 55 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ZIC4 9.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:147,402,129 – 147,412,537
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 187 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 246 bp overlap
BRD2 3 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 176 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 211 bp overlap
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 240 bp overlap
BRD4 6 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 245 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 237 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 218 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 334 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 182 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 235 bp overlap
Bcl11B 1 dataset
Motif ES_0h ES_0h-Bcl11B_MA1989.2 9 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 266 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 226 bp overlap
ChIP H1 ENCFF095JHA 380 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 226 bp overlap
CEBPA 1 dataset
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 164 bp overlap
CEBPD 1 dataset
Motif ES_0h ES_0h-CEBPD_MA0836.3 8 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 303 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 408 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 326 bp overlap
CTCF 1 dataset
ChIP dorsolateral prefrontal cortex ENCFF394MUG 275 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 230 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 140 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 167 bp overlap
ESR1 1 dataset
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 277 bp overlap
EZH2 27 datasets
ChIP A673 ENCFF790MVL 408 bp overlap
ChIP A673 ENCFF790MVL 408 bp overlap
ChIP A673 ENCFF955JRZ 408 bp overlap
ChIP GM23338 ENCFF613YON 408 bp overlap
ChIP GM23338 ENCFF886DXX 187 bp overlap
ChIP H1 ENCFF232NZA 408 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 370 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 300 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 408 bp overlap
ChIP PC-3 ENCFF855OUB 378 bp overlap
ChIP PC-3 ENCFF855OUB 399 bp overlap
ChIP PC-3 ENCFF855OUB 197 bp overlap
ChIP PC-3 ENCFF928VSN 392 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 408 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 336 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 330 bp overlap
ChIP astrocyte ENCFF365JTP 408 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 388 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 383 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 361 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 361 bp overlap
ChIP fibroblast of lung ENCFF479BAW 408 bp overlap
ChIP fibroblast of lung ENCFF479BAW 94 bp overlap
ChIP hepatocyte ENCFF552DZB 408 bp overlap
ChIP keratinocyte ENCFF070STK 109 bp overlap
ChIP neural progenitor cell ENCFF018MKA 408 bp overlap
ChIP neural progenitor cell ENCFF472NFV 408 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 250 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 61 bp overlap
GRHL2 3 datasets
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 172 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 193 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 307 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 236 bp overlap
JARID2 5 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 257 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 180 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 388 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 388 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 320 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 385 bp overlap
KDM5B 1 dataset
ChIP T-47D GSE46055.KDM5B.T-47D 159 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 149 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 214 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 123 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 284 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 238 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 176 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 313 bp overlap
POU5F1 2 datasets
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 223 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 297 bp overlap
Prdm15 1 dataset
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 164 bp overlap
RELA 1 dataset
ChIP SGBS GSE64233.RELA.SGBS 102 bp overlap
RNF2 1 dataset
ChIP H1 ENCFF239FFS 408 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 174 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 333 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 221 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 97 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 104 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 206 bp overlap
SPDEF 1 dataset
Motif ES_0h ES_0h-SPDEF_MA0686.2 10 bp overlap
SS18 1 dataset
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 333 bp overlap
STAT3 12 datasets
ChIP A139 GSE85579.STAT3.A139 182 bp overlap
ChIP T-47D_JC4735 GSE126004.STAT3.T-47D_JC4735 264 bp overlap
ChIP T-47D_JC4737 GSE126004.STAT3.T-47D_JC4737 294 bp overlap
ChIP T-47D_JC4739 GSE126004.STAT3.T-47D_JC4739 274 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 317 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 313 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 396 bp overlap
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 375 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 380 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 408 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 408 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 408 bp overlap
SUZ12 8 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 408 bp overlap
ChIP H1 ENCFF881NFR 408 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 351 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 197 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 227 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 337 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 343 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 177 bp overlap
Stat2 1 dataset
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 408 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 179 bp overlap
TFDP1 1 dataset
Motif ES_0h ES_0h-TFDP1_MA1122.2 8 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 189 bp overlap
Tbx6 1 dataset
Motif ES_0h ES_0h-Tbx6_MA1567.3 9 bp overlap
ZNF528 1 dataset
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ZNF677 1 dataset
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap