chr3 : 137,294,714 – 137,295,117
403 bp 63 TFs 0 linked genes
This 403 bp open chromatin element has no linked target genes and is bound by 63 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:137,289,714 – 137,300,117
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 214 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 240 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 403 bp overlap
CTCF 43 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 190 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 169 bp overlap
ChIP D721Med ENCFF513FYD 166 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 143 bp overlap
ChIP GM10266 ENCFF241YYF 150 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 89 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 269 bp overlap
ChIP GM23338 ENCFF531QOI 244 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 107 bp overlap
ChIP H9 ENCFF152GTF 284 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 186 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 140 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 163 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 144 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 274 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 159 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 106 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 130 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 170 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 178 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 117 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 104 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 73 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 94 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 209 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 113 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 147 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 96 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 170 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 98 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 176 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 312 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 149 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 177 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 104 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 288 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 166 bp overlap
ChIP endodermal cell ENCFF471YCZ 251 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 92 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 102 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 116 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 140 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 106 bp overlap
Crx 2 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif DE_24h DE_24h-Crx_MA0467.3 6 bp overlap
DPRX 2 datasets
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
Motif DE_24h DE_24h-DPRX_MA1480.2 9 bp overlap
Dmbx1 2 datasets
Motif DE_12h DE_12h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_24h DE_24h-Dmbx1_MA0883.2 10 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 191 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 124 bp overlap
GATA3 2 datasets
ChIP Kelly GSE94822.GATA3.Kelly 258 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 161 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 245 bp overlap
ChIP DE DE-GATA4-2 281 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 265 bp overlap
ChIP DE DE-GATA6-2 314 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 403 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 403 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 403 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 346 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 403 bp overlap
GFI1 2 datasets
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Motif DE_24h DE_24h-GFI1_MA0038.3 11 bp overlap
GSC 2 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif DE_24h DE_24h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif DE_24h DE_24h-GSC2_MA0891.2 6 bp overlap
Gfi1B 2 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_24h DE_24h-Gfi1B_MA0483.2 10 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 261 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 357 bp overlap
HOXC13 2 datasets
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
Motif DE_24h DE_24h-HOXC13_MA0907.2 9 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 138 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 302 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 302 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MGA::EVX1 1 dataset
Motif DE_24h DE_24h-MGAEVX1_MA1960.2 11 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 403 bp overlap
ChIP Kelly GSE80151.MYCN.Kelly 273 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 302 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 403 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 275 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 279 bp overlap
ChIP hESC GSE18292.NANOG.hESC 189 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 245 bp overlap
ONECUT1 4 datasets
Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap
Motif DE_24h DE_24h-ONECUT1_MA0679.3 9 bp overlap
ChIP H9 ERP004206.ONECUT1.H9 233 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 374 bp overlap
ONECUT3 2 datasets
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
Motif DE_24h DE_24h-ONECUT3_MA0757.2 12 bp overlap
OTX1 2 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif DE_24h DE_24h-OTX1_MA0711.2 6 bp overlap
PHOX2A 2 datasets
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_24h DE_24h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 309 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 176 bp overlap
PITX1 2 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif DE_24h DE_24h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
Motif DE_24h DE_24h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif DE_24h DE_24h-PITX3_MA0714.2 6 bp overlap
POU2F1 2 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif DE_24h DE_24h-POU3F4_MA0789.1 9 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 303 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 155 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_24h DE_24h-POU5F1B_MA0792.1 9 bp overlap
PROP1 2 datasets
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
Motif DE_24h DE_24h-PROP1_MA0715.1 11 bp overlap
RAD21 6 datasets
ChIP GM12878 ENCFF101UQZ 166 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 140 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 259 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 123 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 140 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 158 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 172 bp overlap
RHOXF1 2 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_24h DE_24h-RHOXF1_MA0719.2 6 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 204 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 370 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 403 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 345 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 269 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 346 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 334 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 268 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 306 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 210 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 282 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 191 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 403 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 311 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 287 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 184 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 94 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 103 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 160 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif DE_24h DE_24h-Stat5b_MA1625.2 9 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 284 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 206 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 270 bp overlap
TP53 1 dataset
ChIP H9 GSE142050.TP53.H9 345 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 130 bp overlap
ZNF274 1 dataset
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 68 bp overlap
ZNF382 2 datasets
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
Motif DE_24h DE_24h-ZNF382_MA1594.1 24 bp overlap
ZNF384 1 dataset
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ZNF547 2 datasets
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
Motif DE_24h DE_24h-ZNF547_MA2334.1 13 bp overlap
ZNF558 3 datasets
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
Motif DE_24h DE_24h-ZNF558_MA2335.1 29 bp overlap
ZNF677 2 datasets
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Motif DE_24h DE_24h-ZNF677_MA2101.1 12 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap
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