chr3 : 104,291,435 104,291,710
275 bp 76 TFs 0 linked genes
This 275 bp open chromatin element has no linked target genes and is bound by 76 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:104,286,435 – 104,296,710
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 146 bp overlap
ASH2L 1 dataset
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 227 bp overlap
ATF3 4 datasets
ChIP liver ENCFF375GID 275 bp overlap
ChIP liver ENCFF867MFZ 275 bp overlap
ChIP liver ENCSR480LIS.ATF3.liver 244 bp overlap
ChIP liver ENCSR205FOW.ATF3.liver 272 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Arx 1 dataset
Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BRD2 4 datasets
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 209 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 253 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 275 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 275 bp overlap
BRD4 9 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 199 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 143 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 205 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 170 bp overlap
ChIP MOLT-4_DMSO GSE79288.BRD4.MOLT-4_DMSO 110 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 192 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 275 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 96 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 275 bp overlap
BRD7 1 dataset
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 172 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CBX5 1 dataset
ChIP GM12878 ENCSR372GIN.CBX5.GM12878 115 bp overlap
CDK9 2 datasets
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 66 bp overlap
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 185 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 195 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 191 bp overlap
CREBBP 1 dataset
ChIP fibroblast_senescent GSE106146.CREBBP.fibroblast_senescent 156 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
EGR1 2 datasets
ChIP liver ENCFF130MBW 257 bp overlap
ChIP liver ENCSR736BUG.EGR1.liver 157 bp overlap
EN2 1 dataset
Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 124 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA1 3 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 275 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 260 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 212 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 125 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 275 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 275 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 267 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 275 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 176 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 224 bp overlap
GATA4 1 dataset
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 127 bp overlap
GBX1 1 dataset
Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HNF4A 4 datasets
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 188 bp overlap
ChIP liver ENCFF354NRH 275 bp overlap
ChIP liver ENCFF449HPV 272 bp overlap
ChIP liver ERP002306.HNF4A.liver 250 bp overlap
HNF4G 2 datasets
ChIP liver ENCFF170YNZ 275 bp overlap
ChIP liver ENCSR297GII.HNF4G.liver 138 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IRF1 2 datasets
ChIP AsPC-1_IFNg GSE141606.IRF1.AsPC-1_IFNg 59 bp overlap
ChIP U-937 GSE142197.IRF1.U-937 275 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 237 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 86 bp overlap
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 85 bp overlap
JUND 4 datasets
ChIP liver ENCFF007WWT 91 bp overlap
ChIP liver ENCFF557PGE 275 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 247 bp overlap
ChIP liver ENCSR196HGZ.JUND.liver 171 bp overlap
KDM4A 1 dataset
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 165 bp overlap
LBX1 1 dataset
Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap
MAX 1 dataset
ChIP liver ENCFF584QGB 257 bp overlap
MED1 1 dataset
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 138 bp overlap
MED25 1 dataset
ChIP PC-3_FLAG GSE133445.MED25.PC-3_FLAG 233 bp overlap
MEF2B 1 dataset
ChIP DLBCL GSE110682.MEF2B.DLBCL 75 bp overlap
MITF 1 dataset
Motif DE_12h DE_12h-MITF_MA0620.4 10 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 195 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 240 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 275 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 177 bp overlap
NR2F2 4 datasets
ChIP liver ENCFF565JGD 275 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 154 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 275 bp overlap
ChIP uterus_STROMA_ENDOMETRIUM GSE52008.NR2F2.uterus_STROMA_ENDOMETRIUM 275 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
PRRX2 1 dataset
Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 135 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 275 bp overlap
ChIP liver ENCFF807CIA 214 bp overlap
SMARCA4 8 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 160 bp overlap
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 65 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 275 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 275 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 191 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 242 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 275 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 265 bp overlap
SP1 2 datasets
ChIP liver ENCFF597LFJ 219 bp overlap
ChIP liver ENCFF769YSM 182 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 51 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 51 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 164 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 3 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 247 bp overlap
ChIP Panc1 ENCFF829HHL 275 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 115 bp overlap
USF1 1 dataset
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
VENTX 1 dataset
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 170 bp overlap