chr3 : 34,033,875 – 34,034,364
489 bp 72 TFs 1 linked gene
This 489 bp open chromatin element is linked to PDCD6IP and is bound by 72 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PDCD6IP 235.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:34,028,875 – 34,039,364
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 321 bp overlap
ChIP K562 ENCFF938UXQ 303 bp overlap
Ahr::Arnt 2 datasets
Motif DE_48h DE_48h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 262 bp overlap
ChIP K562 ENCFF963TXY 361 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 321 bp overlap
ChIP K562 ENCFF673OEZ 285 bp overlap
CEBPB 2 datasets
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 142 bp overlap
ChIP K562 ENCFF194QGF 302 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 137 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 259 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 470 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 303 bp overlap
ChIP BLaER1 ENCFF896HSY 247 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 222 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 205 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 207 bp overlap
EP300 2 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 134 bp overlap
ChIP K562 ENCFF226VMS 317 bp overlap
FIGLA 2 datasets
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOSL1 2 datasets
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 212 bp overlap
ChIP K562 ENCFF455MKD 489 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 388 bp overlap
Foxq1 1 dataset
Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap
GATA1 5 datasets
ChIP K-562 GSE107726.GATA1.K-562 214 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 163 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 196 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 271 bp overlap
ChIP K562 ENCFF094CMK 235 bp overlap
GATA2 5 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 489 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
ChIP K562 ENCFF830LLA 456 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 223 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 458 bp overlap
ChIP DE DE-GATA4-2 383 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
GATA5 2 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 489 bp overlap
ChIP DE DE-GATA6-2 387 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 261 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 276 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 404 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 338 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 300 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 390 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 111 bp overlap
Gata3 2 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 323 bp overlap
HES1 2 datasets
ChIP K-562 ENCSR091JXL.HES1.K-562 245 bp overlap
ChIP K562 ENCFF919JVU 348 bp overlap
HMBOX1 5 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 259 bp overlap
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 64 bp overlap
ChIP K562 ENCFF317JJX 130 bp overlap
ChIP K562 ENCFF317JJX 433 bp overlap
ChIP K562 ENCFF317JJX 190 bp overlap
Isl1 2 datasets
Motif DE_48h DE_48h-Isl1_MA1608.2 7 bp overlap
Motif DE_60h DE_60h-Isl1_MA1608.2 7 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 409 bp overlap
JUND 2 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 117 bp overlap
ChIP K562 ENCFF830LVJ 281 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 234 bp overlap
MEIS1 2 datasets
Motif DE_48h DE_48h-MEIS1_MA1639.2 9 bp overlap
Motif DE_60h DE_60h-MEIS1_MA1639.2 9 bp overlap
MEIS2 4 datasets
Motif DE_48h DE_48h-MEIS2_MA1640.2 9 bp overlap
Motif DE_60h DE_60h-MEIS2_MA1640.2 9 bp overlap
ChIP K-562 ENCSR851BNE.MEIS2.K-562 389 bp overlap
ChIP K562 ENCFF320GSD 259 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 195 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR113LAS.MTA2.K-562 206 bp overlap
MYB 3 datasets
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 236 bp overlap
Mecom 2 datasets
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NCOR1 2 datasets
ChIP K-562 ENCSR910JAI.NCOR1.K-562 208 bp overlap
ChIP K562 ENCFF788MPU 359 bp overlap
NKX6-3 2 datasets
Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap
Motif DE_60h DE_60h-NKX6-3_MA1530.2 8 bp overlap
PAX2 2 datasets
Motif DE_48h DE_48h-PAX2_MA0067.3 16 bp overlap
Motif DE_60h DE_60h-PAX2_MA0067.3 16 bp overlap
PAX8 2 datasets
Motif DE_48h DE_48h-PAX8_MA2094.1 16 bp overlap
Motif DE_60h DE_60h-PAX8_MA2094.1 16 bp overlap
PBX2 4 datasets
Motif DE_48h DE_48h-PBX2_MA1113.3 9 bp overlap
Motif DE_60h DE_60h-PBX2_MA1113.3 9 bp overlap
ChIP K-562 ENCSR263DFP.PBX2.K-562 349 bp overlap
ChIP K562 ENCFF286KMN 254 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 265 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 380 bp overlap
ChIP K562 ENCFF236IUS 234 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 159 bp overlap
RAD51 1 dataset
ChIP K-562 ENCSR524BUE.RAD51.K-562 192 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 297 bp overlap
RELB 1 dataset
Motif DE_60h DE_60h-RELB_MA1117.2 7 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 169 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 262 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 233 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 262 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 479 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 436 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 241 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 294 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 209 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 474 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 214 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 284 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 303 bp overlap
TAL1 12 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 215 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 489 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 243 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 225 bp overlap
ChIP K-562_MYO1D-Non-hub_KO GSE107726.TAL1.K-562_MYO1D-Non-hub_KO 185 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 175 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 245 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 216 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 254 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 243 bp overlap
ChIP K562 ENCFF620GMX 241 bp overlap
ChIP K562 ENCFF661CCK 273 bp overlap
TCF12 4 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 278 bp overlap
ChIP K-562 ENCSR189TRZ.TCF12.K-562 209 bp overlap
ChIP K562 ENCFF909RDY 376 bp overlap
ChIP K562 ENCFF931DJY 228 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 285 bp overlap
ChIP K562 ENCFF319QZT 323 bp overlap
TEAD2 1 dataset
Motif DE_60h DE_60h-TEAD2_MA1121.2 7 bp overlap
TEAD4 2 datasets
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
ChIP K562 ENCFF673NIK 156 bp overlap
TRIM24 1 dataset
ChIP K-562 ENCSR907MZR.TRIM24.K-562 270 bp overlap
TRPS1 2 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Yy1 2 datasets
Motif DE_48h DE_48h-Yy1_MA0095.4 8 bp overlap
Motif DE_60h DE_60h-Yy1_MA0095.4 8 bp overlap
ZEB1 2 datasets
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZEB2 3 datasets
ChIP K-562 ENCSR322CFO.ZEB2.K-562 283 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 299 bp overlap
ChIP K562 ENCFF795CMH 370 bp overlap
ZNF24 1 dataset
ChIP K562 ENCFF497GLV 374 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 204 bp overlap
ZNF652 2 datasets
Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
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