chr1 : 53,568,610 – 53,568,821
211 bp 55 TFs 0 linked genes
This 211 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:53,563,610 – 53,573,821
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 211 bp overlap
ChIP K562 ENCFF938UXQ 211 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF921JQW 211 bp overlap
ATF7 2 datasets
ChIP K-562 ENCSR972ZBV.ATF7.K-562 207 bp overlap
ChIP K562 ENCFF308SKS 211 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 211 bp overlap
ChIP K562 ENCFF963TXY 211 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 211 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 177 bp overlap
ChIP K562 ENCFF673OEZ 211 bp overlap
CEBPA 1 dataset
ChIP SKH1 GSE102697.CEBPA.SKH1 160 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 211 bp overlap
ChIP K562 ENCFF403WPG 211 bp overlap
DPF2 2 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 165 bp overlap
ChIP K562 ENCFF775HUO 211 bp overlap
EP300 1 dataset
ChIP AML GSE131939.EP300.AML 119 bp overlap
ERG 2 datasets
ChIP ME-1 GSE46044.ERG.ME-1 205 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 211 bp overlap
EVI1 1 dataset
ChIP SKH1 GSE87283.EVI1.SKH1 162 bp overlap
FOSL1 3 datasets
ChIP K562 ENCFF455MKD 211 bp overlap
ChIP K562 ENCFF455MKD 211 bp overlap
ChIP K562 ENCFF455MKD 65 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 108 bp overlap
FOXM1 1 dataset
ChIP K-562 ENCSR429QPP.FOXM1.K-562 211 bp overlap
GATA1 2 datasets
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 175 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 161 bp overlap
GATA2 6 datasets
ChIP K562 ENCFF544PCK 203 bp overlap
ChIP K562 ENCFF830LLA 211 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 211 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 171 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 211 bp overlap
ChIP TSU-1621MT GSE60477.GATA2.TSU-1621MT 196 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 211 bp overlap
ChIP DE DE-GATA4-2 211 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 211 bp overlap
ChIP DE DE-GATA6-2 211 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 211 bp overlap
GTF2I 1 dataset
ChIP K562 ENCFF539BYI 101 bp overlap
HDAC1 3 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 211 bp overlap
ChIP K-562 ENCSR711VWL.HDAC1.K-562 211 bp overlap
ChIP K562 ENCFF968WBH 211 bp overlap
HES1 1 dataset
ChIP K562 ENCFF919JVU 211 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 204 bp overlap
KDM1A 1 dataset
ChIP K562 ENCFF128TYE 211 bp overlap
KLF16 1 dataset
ChIP K-562 ENCSR760UVO.KLF16.K-562 122 bp overlap
LDB1 2 datasets
ChIP K-562 GSE142227.LDB1.K-562 211 bp overlap
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 183 bp overlap
LMO2 2 datasets
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 171 bp overlap
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 211 bp overlap
LYL1 1 dataset
ChIP TSU-1621MT GSE60477.LYL1.TSU-1621MT 191 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 194 bp overlap
ChIP K562 ENCFF320GSD 211 bp overlap
MITF 3 datasets
ChIP K-562 ENCSR797SWM.MITF.K-562 211 bp overlap
ChIP K-562 ENCSR000FCB.MITF.K-562 153 bp overlap
ChIP K562 ENCFF731XJJ 200 bp overlap
MTA2 1 dataset
ChIP K562 ENCFF880VZB 211 bp overlap
MYB 1 dataset
ChIP Loucy GSE94000.MYB.Loucy 211 bp overlap
NCOA1 1 dataset
ChIP K-562 ENCSR658WFQ.NCOA1.K-562 191 bp overlap
NCOR1 4 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 211 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 211 bp overlap
ChIP K562 ENCFF788MPU 211 bp overlap
ChIP K562 ENCFF866HRM 211 bp overlap
PKNOX1 1 dataset
ChIP K562 ENCFF236IUS 211 bp overlap
PRDM10 2 datasets
ChIP K-562 ENCSR120MPG.PRDM10.K-562 181 bp overlap
ChIP K562 ENCFF740YLK 119 bp overlap
RNF2 3 datasets
ChIP K562 ENCFF653BQJ 211 bp overlap
ChIP ME-1_Con GSE128771.RNF2.ME-1_Con 65 bp overlap
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 181 bp overlap
RUNX1 8 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 150 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 150 bp overlap
ChIP ME-1 GSE117138.RUNX1.ME-1 211 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 211 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 211 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 211 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 211 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 120 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 197 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 203 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 211 bp overlap
ChIP K562 ENCFF506JCB 211 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 211 bp overlap
ChIP K562 ENCFF690CFF 211 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 211 bp overlap
ChIP K562 ENCFF059YCJ 211 bp overlap
TAL1 13 datasets
ChIP CCRF-CEM GSE33850.TAL1.CCRF-CEM 201 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 211 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 201 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 147 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 178 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 211 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 211 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 211 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 199 bp overlap
ChIP K562 ENCFF620GMX 211 bp overlap
ChIP K562 ENCFF661CCK 211 bp overlap
ChIP RPMI8402 GSE39179.TAL1.RPMI8402 175 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 211 bp overlap
TCF12 4 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 211 bp overlap
ChIP K562 ENCFF931DJY 211 bp overlap
ChIP Kasumi-1 GSE43834.TCF12.Kasumi-1 156 bp overlap
ChIP ME-1 GSE46044.TCF12.ME-1 202 bp overlap
TCF3 3 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 211 bp overlap
ChIP K562 ENCFF319QZT 211 bp overlap
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 211 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 211 bp overlap
TRIM24 2 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 211 bp overlap
ChIP K562 ENCFF616RIL 211 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 134 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 206 bp overlap
ChIP K562 ENCFF795CMH 211 bp overlap
ZMIZ1 1 dataset
ChIP THP-6_shCtrl GSE138516.ZMIZ1.THP-6_shCtrl 139 bp overlap
ZNF134 1 dataset
ChIP K562 ENCFF502NWS 199 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 211 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCFF906MQV 63 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 211 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 130 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 97 bp overlap
Huangfu Lab · Publications · Resources · Contact