chr3 : 3,407,448 – 3,408,313

865 bp 82 TFs 0 linked genes

This 865 bp open chromatin element has no linked target genes and is bound by 82 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

82 transcription factors

Cebpa 2 datasets

ChIP BLaER1 ENCFF031ISE 253 bp overlap

ChIP BLaER1 ENCFF031ISE 157 bp overlap

EGR1 1 dataset

ChIP HepG2 ENCFF674RQO 557 bp overlap

EGR2 2 datasets

Motif DE_12h DE_12h-EGR2_MA0472.2 11 bp overlap

Motif ES_0h ES_0h-EGR2_MA0472.2 11 bp overlap

EGR3 2 datasets

Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap

Motif ES_0h ES_0h-EGR3_MA0732.2 11 bp overlap

EZH2 1 dataset

ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 289 bp overlap

FOXA1 4 datasets

Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap

ChIP HepG2 ENCFF207NVJ 128 bp overlap

ChIP HepG2 ENCFF361KNY 285 bp overlap

ChIP HepG2 ENCFF740VZW 89 bp overlap

FOXA2 6 datasets

ChIP DE DE-FOXA2-1 442 bp overlap

ChIP DE DE-FOXA2-2 394 bp overlap

Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap

ChIP HepG2 ENCFF533COJ 128 bp overlap

ChIP HepG2 ENCFF570ABM 121 bp overlap

ChIP HepG2 ENCFF894AYY 200 bp overlap

FOXA3 1 dataset

Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap

FOXB1 1 dataset

Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap

FOXC1 1 dataset

Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap

FOXC2 1 dataset

Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap

FOXD1 1 dataset

Motif DE_12h DE_12h-FOXD1_MA0031.2 7 bp overlap

FOXD3 1 dataset

Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap

FOXE1 1 dataset

Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap

FOXF2 1 dataset

Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap

FOXG1 1 dataset

Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap

FOXI1 1 dataset

Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap

FOXK1 1 dataset

Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap

FOXK2 1 dataset

Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap

FOXL1 1 dataset

Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap

FOXN3 1 dataset

Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap

FOXO4 1 dataset

Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap

FOXO6 1 dataset

Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap

FOXP1 1 dataset

Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap

FOXP2 1 dataset

Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap

FOXP3 1 dataset

Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap

FOXP4 1 dataset

Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap

FOXS1 1 dataset

Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap

Foxf1 1 dataset

Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap

Foxj2 1 dataset

Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap

Foxj3 1 dataset

Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap

Foxl2 1 dataset

Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap

Foxo1 1 dataset

Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap

Foxo3 1 dataset

Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap

Foxq1 1 dataset

Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap

GLIS1 2 datasets

Motif DE_12h DE_12h-GLIS1_MA0735.2 15 bp overlap

Motif ES_0h ES_0h-GLIS1_MA0735.2 15 bp overlap

GLIS3 2 datasets

Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap

Motif ES_0h ES_0h-GLIS3_MA0737.1 14 bp overlap

HIC2 2 datasets

Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap

Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap

Hmga1 1 dataset

Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap

KLF4 1 dataset

Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap

KLF5 1 dataset

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

MEIS1 2 datasets

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

NKX2-4 2 datasets

Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap

Motif ES_0h ES_0h-NKX2-4_MA2003.2 8 bp overlap

NKX2-8 2 datasets

Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap

Motif ES_0h ES_0h-NKX2-8_MA0673.2 8 bp overlap

NR1H2::RXRA 1 dataset

Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap

NR2C1 1 dataset

Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap

NR2C2 4 datasets

Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap

Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap

Motif ES_0h ES_0h-NR2C2_MA0504.2 14 bp overlap

ChIP HepG2 ENCFF944PRH 671 bp overlap

NR2F1 2 datasets

Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap

ChIP HepG2 ENCFF953UJL 301 bp overlap

NR2F6 2 datasets

ChIP HepG2 ENCFF429VKC 441 bp overlap

ChIP HepG2 ENCFF514UJI 345 bp overlap

Nkx2-1 2 datasets

Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap

Motif ES_0h ES_0h-Nkx2-1_MA1994.2 7 bp overlap

Nr1H2 1 dataset

Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap

Nr2f6 1 dataset

Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap

PKNOX2 1 dataset

Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap

PPARD 3 datasets

Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap

Motif ES_0h ES_0h-PPARD_MA1550.2 14 bp overlap

PROX1 1 dataset

ChIP HepG2 ENCFF016ZJS 481 bp overlap

Pparg::Rxra 3 datasets

Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap

Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap

RUNX3 1 dataset

Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap

RXRB 1 dataset

Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap

RXRG 1 dataset

Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap

Rxra 1 dataset

Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap

SOX10 1 dataset

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

SOX4 1 dataset

Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap

Sox11 1 dataset

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

TGIF1 1 dataset

Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap

TGIF2 1 dataset

Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap

TGIF2LX 1 dataset

Motif DE_12h DE_12h-TGIF2LX_MA1571.1 12 bp overlap

THRB 1 dataset

Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap

TP53 1 dataset

ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 263 bp overlap

VEZF1 2 datasets

Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap

Motif ES_0h ES_0h-VEZF1_MA1578.2 6 bp overlap

ZBTB6 2 datasets

Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap

Motif ES_0h ES_0h-ZBTB6_MA1581.2 9 bp overlap

ZNF148 2 datasets

Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap

Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap

ZNF281 3 datasets

Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap

Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap

ChIP HepG2 ENCFF585QNU 150 bp overlap

ZNF282 2 datasets

Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap

Motif ES_0h ES_0h-ZNF282_MA1154.2 15 bp overlap

ZNF317 1 dataset

Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap

ZNF320 2 datasets

Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap

Motif ES_0h ES_0h-ZNF320_MA1976.2 20 bp overlap

ZNF354C 2 datasets

Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap

Motif ES_0h ES_0h-ZNF354C_MA0130.1 6 bp overlap

ZNF701 2 datasets

Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap

Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap

ZNF708 1 dataset

Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap

ZSCAN16 1 dataset

Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap