chr2 : 229,418,054 – 229,418,402
348 bp 66 TFs 0 linked genes
This 348 bp open chromatin element has no linked target genes and is bound by 66 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:229,413,054 – 229,423,402
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AR 1 dataset
ChIP epididymis_HEE_R1881 GSE109061.AR.epididymis_HEE_R1881 130 bp overlap
ASCL1 6 datasets
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 121 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 165 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 198 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 209 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 185 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 348 bp overlap
ATF2 11 datasets
ChIP GM12878 ENCFF066HPG 162 bp overlap
ChIP GM12878 ENCSR961PPA.ATF2.GM12878 227 bp overlap
ChIP H1 ENCFF295GZO 286 bp overlap
ChIP HEK293 ENCFF194VKZ 186 bp overlap
ChIP HEK293 ENCFF194VKZ 345 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 183 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 259 bp overlap
ChIP HepG2 ENCFF955VER 255 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 176 bp overlap
ChIP K562 ENCFF139ZZG 145 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 110 bp overlap
ATF3 1 dataset
ChIP K-562 ENCSR028UIU.ATF3.K-562 197 bp overlap
ATF7 6 datasets
ChIP GM12878 ENCFF037PYH 80 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 202 bp overlap
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 271 bp overlap
ChIP HepG2 ENCFF470FKK 226 bp overlap
ChIP K-562 ENCSR972ZBV.ATF7.K-562 197 bp overlap
ChIP MCF-7 ENCSR866QPZ.ATF7.MCF-7 160 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 348 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 329 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 106 bp overlap
BRD4 10 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 348 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 348 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 274 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 237 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 254 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 345 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 263 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 241 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 272 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 284 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 249 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 189 bp overlap
CREB1 6 datasets
ChIP GM23338 ENCFF432ZEW 187 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 124 bp overlap
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 233 bp overlap
ChIP HepG2 ENCFF792THT 171 bp overlap
ChIP MCF-7 ENCFF867SAS 203 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 136 bp overlap
CTCF 1 dataset
ChIP islet ERP004003.CTCF.islet 150 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 283 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 112 bp overlap
EP300 4 datasets
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 124 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 348 bp overlap
ChIP neural cell ENCFF442QNK 348 bp overlap
ChIP neural cell ENCFF442QNK 240 bp overlap
ESR1 6 datasets
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 348 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 196 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 195 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_6 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_6 200 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 315 bp overlap
ChIP primary-endometrium-cancer_E2_DSG GSE114737.ESR1.primary-endometrium-cancer_E2_DSG 239 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 184 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 263 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 319 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 333 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 348 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 168 bp overlap
HNF1A 1 dataset
ChIP HEE_1 GSE76376.HNF1A.HEE_1 187 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 209 bp overlap
HOXC13 1 dataset
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
JUN 9 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 229 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 266 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 200 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 241 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 235 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 267 bp overlap
ChIP Hep-G2 ENCSR000EEK.JUN.Hep-G2 153 bp overlap
ChIP HepG2 ENCFF401CRH 165 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 95 bp overlap
JUND 4 datasets
ChIP H1 ENCFF010YXS 173 bp overlap
ChIP HepG2 ENCFF869OPW 96 bp overlap
ChIP SK-N-SH ENCSR000EIB.JUND.SK-N-SH 97 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 126 bp overlap
KLF9 2 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 86 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 200 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 271 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 255 bp overlap
MYOD1 3 datasets
ChIP RD GSE137168.MYOD1.RD 226 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 279 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 330 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 194 bp overlap
ChIP H1 ENCFF747ZPQ 237 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 348 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 237 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 164 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 212 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 263 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 194 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 178 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 96 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 151 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 206 bp overlap
PAX8 1 dataset
Motif DE_12h DE_12h-PAX8_MA2094.1 16 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 292 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 327 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 76 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 292 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 169 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMARCA4 4 datasets
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 179 bp overlap
ChIP BT-16_NoDox GSE71504.SMARCA4.BT-16_NoDox 204 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 238 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 348 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 324 bp overlap
SMARCC1 2 datasets
ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 192 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 335 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 348 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 155 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 189 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 71 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 153 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 181 bp overlap
TCF12 2 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 199 bp overlap
TCF3 2 datasets
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
ChIP NPC GSE154479.TCF3.NPC 224 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
VENTX 1 dataset
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 184 bp overlap
ZBTB10 1 dataset
ChIP HEK293 ENCSR004PLU.ZBTB10.HEK293 198 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 321 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 339 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 163 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
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