chr2 : 83,284,188 83,284,485
297 bp 67 TFs 0 linked genes
This 297 bp open chromatin element has no linked target genes and is bound by 67 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:83,279,188 – 83,289,485
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 239 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 131 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 166 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 136 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 297 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 154 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 269 bp overlap
ChIP H1 ENCFF126NLU 200 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 297 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 297 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 266 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 297 bp overlap
ChIP hESC GSE17917.EP300.hESC 206 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 181 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 195 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 297 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 297 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 284 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 294 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 297 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 297 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 297 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 297 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 297 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 297 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 171 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 297 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 297 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 297 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 297 bp overlap
KLF4 2 datasets
ChIP WIBR3 GSE130417.KLF4.WIBR3 119 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 147 bp overlap
LEF1 2 datasets
ChIP hESC GSE64758.LEF1.hESC 227 bp overlap
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 293 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 297 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 297 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 159 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 297 bp overlap
ChIP H1 ENCFF747ZPQ 238 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 297 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 297 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 297 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 297 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 297 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 297 bp overlap
ChIP hESC GSE18292.NANOG.hESC 205 bp overlap
ChIP hESC GSE20650.NANOG.hESC 297 bp overlap
NIPBL 6 datasets
ChIP WA09 GSE105028.NIPBL.WA09 297 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 297 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 296 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 297 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 277 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 297 bp overlap
NR4A1 1 dataset
Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif ES_0h ES_0h-NR4A2_MA0160.3 8 bp overlap
Nanog 1 dataset
Motif ES_0h ES_0h-Nanog_MA2339.1 7 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 243 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 15 datasets
ChIP BG03 GSE21614.POU5F1.BG03 119 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 277 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 133 bp overlap
ChIP H1 ENCFF698ZAP 195 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 297 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 292 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 199 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 297 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 297 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 297 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 297 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 297 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 297 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 297 bp overlap
PRDM14 2 datasets
ChIP hESC GSE22767.PRDM14.hESC 267 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 297 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 297 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 230 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 297 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 250 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 286 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 297 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 297 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 297 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 297 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 297 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 221 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 263 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 296 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE21614.SMAD3.BG03 261 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 214 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 217 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 161 bp overlap
ChIP hESC GSE75297.SMAD3.hESC 184 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 297 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 297 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 297 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 297 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 297 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 297 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 113 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 297 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 297 bp overlap
ChIP H1 ENCFF263FUH 107 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 297 bp overlap
Sox17 1 dataset
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox7 1 dataset
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 278 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 174 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 280 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 297 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 297 bp overlap
TEAD4 4 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 297 bp overlap
ChIP H1 ENCFF778PAX 223 bp overlap
ChIP WTC11 ENCFF114TZS 271 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 297 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 178 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 77 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 236 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap