chr2 : 60,548,952 60,549,140
188 bp 53 TFs 1 linked gene
This 188 bp open chromatin element is linked to BCL11A and is bound by 53 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
BCL11A 1.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:60,543,952 – 60,554,140
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
ATF2 2 datasets
ChIP H1 ENCFF295GZO 188 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 173 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 146 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 188 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 166 bp overlap
BRD4 5 datasets
ChIP CLL_patient1_4h_CpG_BET GSE109411.BRD4.CLL_patient1_4h_CpG_BET 99 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 121 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 188 bp overlap
ChIP P493-6_MYC_1H GSE42262.BRD4.P493-6_MYC_1H 188 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 69 bp overlap
CBX2 2 datasets
ChIP K562 ENCFF578AQI 188 bp overlap
ChIP K562 ENCFF578AQI 68 bp overlap
CBX8 2 datasets
ChIP K562 ENCFF485TBL 188 bp overlap
ChIP K562 ENCFF485TBL 73 bp overlap
CDK9 1 dataset
ChIP P493-6 GSE36354.CDK9.P493-6 52 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 188 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP GM12878 ENCFF249AMT 61 bp overlap
EZH2 5 datasets
ChIP SK-N-MC ENCFF674XUJ 188 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 128 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 188 bp overlap
ChIP hepatocyte ENCFF118DKH 188 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 140 bp overlap
FOXP1 1 dataset
ChIP U2932 ERP010999.FOXP1.U2932 113 bp overlap
HDAC1 1 dataset
ChIP NB4 GSE126720.HDAC1.NB4 143 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 181 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 133 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 120 bp overlap
HNRNPK 3 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 188 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 188 bp overlap
ChIP HepG2 ENCFF493GNS 155 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 97 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 123 bp overlap
KMT2A 3 datasets
ChIP RS4-11 GSE38403.KMT2A.RS4-11 188 bp overlap
ChIP SHI-1 GSE95511.KMT2A.SHI-1 137 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 161 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 122 bp overlap
MEN1 5 datasets
ChIP IMS-M2_DMSO GSE129636.MEN1.IMS-M2_DMSO 188 bp overlap
ChIP MOLM-13_compound10 GSE149183.MEN1.MOLM-13_compound10 184 bp overlap
ChIP MOLM-13_compound11 GSE149183.MEN1.MOLM-13_compound11 132 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 188 bp overlap
ChIP SEM GSE83671.MEN1.SEM 188 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 62 bp overlap
NANOG 4 datasets
ChIP WA01 ERP004238.NANOG.WA01 188 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 188 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 188 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 149 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 99 bp overlap
PCBP2 5 datasets
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 186 bp overlap
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 177 bp overlap
ChIP HepG2 ENCFF033VWK 188 bp overlap
ChIP HepG2 ENCFF033VWK 112 bp overlap
ChIP K-562 GSE120104.PCBP2.K-562 150 bp overlap
PCGF2 1 dataset
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 188 bp overlap
POLR2A 3 datasets
ChIP GM12891 ENCFF012SUT 188 bp overlap
ChIP GM23338 ENCFF450WCS 188 bp overlap
ChIP prostate gland ENCFF881OMH 112 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 50 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 159 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 139 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 188 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 188 bp overlap
RNF2 2 datasets
ChIP K-562 ENCSR820GND.RNF2.K-562 188 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 149 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 146 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 130 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 188 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 188 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 74 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 92 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 188 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 188 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 188 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 188 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 183 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 188 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 188 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 188 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 188 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 188 bp overlap
SUZ12 2 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 104 bp overlap
ChIP MCF-7 ENCSR757EMK.SUZ12.MCF-7 157 bp overlap
TAF1 2 datasets
ChIP WA01 ENCSR000BHO.TAF1.WA01 129 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 57 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 177 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 111 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 131 bp overlap
ZFP36 1 dataset
ChIP A-549 ENCSR294JWV.ZFP36.A-549 104 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 188 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 188 bp overlap
ZNF274 1 dataset
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
ZNF425 1 dataset
ChIP HEK293T GSE78099.ZNF425.HEK293T 188 bp overlap