chr2 : 40,659,035 40,659,234
199 bp 58 TFs 0 linked genes
This 199 bp open chromatin element has no linked target genes and is bound by 58 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:40,654,035 – 40,664,234
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 199 bp overlap
AR 1 dataset
ChIP A-375_SLNCR GSE116189.AR.A-375_SLNCR 199 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 144 bp overlap
BRD4 2 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 139 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 129 bp overlap
BRD7 1 dataset
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 199 bp overlap
Bcl11B 2 datasets
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
Motif ES_0h ES_0h-Bcl11B_MA1989.2 9 bp overlap
CRY1 1 dataset
ChIP U2OS_cordycepin GSE130506.CRY1.U2OS_cordycepin 172 bp overlap
CRY2 1 dataset
ChIP U2OS GSE130602.CRY2.U2OS 176 bp overlap
CSDC2 2 datasets
ChIP SK-N-SH ENCFF868MXA 199 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 199 bp overlap
Dux 1 dataset
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
EHMT2 3 datasets
ChIP A-549 ENCSR321BJQ.EHMT2.A-549 199 bp overlap
ChIP A549 ENCFF026GWM 199 bp overlap
ChIP HepG2 ENCFF004KYI 199 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 199 bp overlap
FOXB1 1 dataset
Motif ES_0h ES_0h-FOXB1_MA0845.1 11 bp overlap
FOXD3 1 dataset
Motif ES_0h ES_0h-FOXD3_MA0041.3 14 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 104 bp overlap
Gfi1B 2 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 166 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 182 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 164 bp overlap
HDAC2 1 dataset
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 124 bp overlap
IRF7 1 dataset
Motif ES_0h ES_0h-IRF7_MA0772.2 13 bp overlap
Irf1 1 dataset
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 126 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MIER2 1 dataset
ChIP HepG2 ENCFF997QIX 182 bp overlap
MXI1 1 dataset
ChIP WA01 ENCSR000EBR.MXI1.WA01 129 bp overlap
Msgn1 2 datasets
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap
PGR_A 1 dataset
ChIP hESC GSE62475.PGR_A.hESC 199 bp overlap
PGR_B 1 dataset
ChIP hESC GSE62475.PGR_B.hESC 191 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 199 bp overlap
RAD21 1 dataset
ChIP HEC-1-B_FFRR-insertion GSE140868.RAD21.HEC-1-B_FFRR-insertion 67 bp overlap
RCOR1 2 datasets
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 171 bp overlap
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 197 bp overlap
REST 73 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 199 bp overlap
ChIP A-549 ENCSR000BQP.REST.A-549 199 bp overlap
ChIP A549 ENCFF148AIS 199 bp overlap
ChIP A549 ENCFF148AIS 199 bp overlap
ChIP CD4 GSE49570.REST.CD4 163 bp overlap
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
ChIP GM12878 ENCFF235NGC 179 bp overlap
ChIP GM12878 ENCFF943QPB 137 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 199 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 199 bp overlap
ChIP GM23338 ENCFF024TCL 192 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 199 bp overlap
ChIP GP5D GSE51234.REST.GP5D 199 bp overlap
ChIP GP5D_SIRAD21 GSE51234.REST.GP5D_SIRAD21 199 bp overlap
ChIP H1 ENCFF203SWY 199 bp overlap
ChIP H1 ENCFF429RUE 199 bp overlap
ChIP HCT-116 ENCSR000BVI.REST.HCT-116 193 bp overlap
ChIP HCT116 ENCFF929AYY 199 bp overlap
ChIP HEK293 ENCFF073DOT 182 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 199 bp overlap
ChIP HL-60 ENCFF589LOF 199 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 199 bp overlap
ChIP HeLa-S3 ENCFF911DTC 199 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 199 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 199 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 193 bp overlap
ChIP HepG2 ENCFF122AWR 199 bp overlap
ChIP HepG2 ENCFF800JSL 115 bp overlap
ChIP Ishikawa ENCFF456OHV 199 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 199 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 199 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 199 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 191 bp overlap
ChIP K562 ENCFF430APM 199 bp overlap
ChIP K562 ENCFF688UKW 199 bp overlap
ChIP K562 ENCFF758CZL 199 bp overlap
ChIP LNCaP GSE119385.REST.LNCaP 199 bp overlap
ChIP MCF-7 ENCFF893RRD 199 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 199 bp overlap
ChIP NCI-H295R GSE49014.REST.NCI-H295R 161 bp overlap
ChIP NCI-H295R_SF1 GSE49014.REST.NCI-H295R_SF1 166 bp overlap
ChIP PANC-1 ENCSR000BUP.REST.PANC-1 199 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 198 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 189 bp overlap
ChIP PFSK-1 ENCFF668WMP 199 bp overlap
ChIP PFSK-1 ENCFF845VHA 199 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 199 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 180 bp overlap
ChIP Panc1 ENCFF338WSQ 199 bp overlap
ChIP Panc1 ENCFF518EEQ 199 bp overlap
ChIP Panc1 ENCFF629OJO 199 bp overlap
ChIP SK-N-SH ENCFF635KBN 199 bp overlap
ChIP SK-N-SH ENCFF861MKH 160 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 199 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 199 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 199 bp overlap
ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 199 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 199 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 199 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 199 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 199 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 199 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 199 bp overlap
ChIP hiPSC_IIA11 GSE106870.REST.hiPSC_IIA11 199 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 199 bp overlap
ChIP liver ENCFF240FWT 199 bp overlap
ChIP liver ENCFF577AZT 199 bp overlap
ChIP liver ENCSR867WPH.REST.liver 199 bp overlap
ChIP liver ENCSR893QWP.REST.liver 199 bp overlap
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.REST.metastatic-neuroblastoma_CHLA90 199 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.REST.metastatic-neuroblastoma_SKNMM 185 bp overlap
ChIP neural ENCSR000BTV.REST.neural 169 bp overlap
RNF2 2 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 146 bp overlap
ChIP A549 ENCFF650XYA 119 bp overlap
RUNX1 6 datasets
ChIP 697 GSE138031.RUNX1.697 169 bp overlap
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 199 bp overlap
ChIP CD34_ADULT GSE70660.RUNX1.CD34_ADULT 199 bp overlap
ChIP Kasumi-1 GSE62847.RUNX1.Kasumi-1 168 bp overlap
ChIP MV4-11 GSE79899.RUNX1.MV4-11 199 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 199 bp overlap
RUNX2 4 datasets
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
Motif ES_0h ES_0h-RUNX2_MA0511.2 9 bp overlap
ChIP PER-117 GSE151819.RUNX2.PER-117 177 bp overlap
ChIP SaOS-2 GSE76937.RUNX2.SaOS-2 199 bp overlap
Runx1 2 datasets
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap
SIN3A 2 datasets
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 155 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 120 bp overlap
SMARCA4 5 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 199 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 152 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 199 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 169 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 178 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 169 bp overlap
SMARCC1 3 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 199 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 186 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 195 bp overlap
SMC1 1 dataset
ChIP HMEC-1 GSE101921.SMC1.HMEC-1 132 bp overlap
SNAI2 2 datasets
ChIP SK-N-SH ENCFF449PID 199 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 199 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
TEAD4 5 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 199 bp overlap
ChIP A549 ENCFF243FTL 110 bp overlap
ChIP BE2C GSE84389.TEAD4.BE2C 104 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 136 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 104 bp overlap
TFAP2A 1 dataset
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 199 bp overlap
TFAP2C 2 datasets
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 182 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 159 bp overlap
TP53 1 dataset
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 110 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 199 bp overlap
ZBTB26 1 dataset
Motif ES_0h ES_0h-ZBTB26_MA1579.2 8 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZNF213 1 dataset
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF24 1 dataset
Motif ES_0h ES_0h-ZNF24_MA1124.1 13 bp overlap
ZNF708 2 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
ZNF730 1 dataset
ChIP HEK293T GSE78099.ZNF730.HEK293T 135 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 155 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap