chr2 : 39,647,042 – 39,647,442

400 bp 66 TFs 0 linked genes

This 400 bp open chromatin element has no linked target genes and is bound by 66 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

66 transcription factors

BCL6 1 dataset

Motif ES_0h ES_0h-BCL6_MA0463.3 13 bp overlap

BCL6B 1 dataset

Motif ES_0h ES_0h-BCL6B_MA0731.1 17 bp overlap

BRD4 3 datasets

ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 92 bp overlap

ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 213 bp overlap

ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 338 bp overlap

CDX2 2 datasets

Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap

Motif ES_0h ES_0h-CDX2_MA0465.3 8 bp overlap

CREBBP 1 dataset

ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 97 bp overlap

CTCF 1 dataset

ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 149 bp overlap

CTNNB1 1 dataset

ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 313 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF031ISE 70 bp overlap

EP300 1 dataset

ChIP AML GSE131939.EP300.AML 93 bp overlap

ESR1 1 dataset

ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 376 bp overlap

ETV5::DRGX 2 datasets

Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap

Motif ES_0h ES_0h-ETV5DRGX_MA1944.2 12 bp overlap

EZH2 1 dataset

ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 98 bp overlap

FOXA1 2 datasets

ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 281 bp overlap

ChIP primary-prostate-cancer_P4_DSG GSE114737.FOXA1.primary-prostate-cancer_P4_DSG 120 bp overlap

Gli1 1 dataset

Motif ES_0h ES_0h-Gli1_MA1990.2 10 bp overlap

Gli2 1 dataset

Motif ES_0h ES_0h-Gli2_MA0734.4 9 bp overlap

HDAC2 2 datasets

ChIP PC-3 GSE147455.HDAC2.PC-3 168 bp overlap

ChIP PC-3 GSE147455.HDAC2.PC-3 172 bp overlap

HOXB13 2 datasets

Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap

Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap

Hand1::Tcf3 1 dataset

Motif ES_0h ES_0h-Hand1Tcf3_MA0092.2 9 bp overlap

Hoxa13 2 datasets

Motif DE_12h DE_12h-Hoxa13_MA0650.4 8 bp overlap

Motif ES_0h ES_0h-Hoxa13_MA0650.4 8 bp overlap

Hoxd13 2 datasets

Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap

Motif ES_0h ES_0h-Hoxd13_MA0909.4 7 bp overlap

JARID2 1 dataset

ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 106 bp overlap

KLF14 1 dataset

Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap

KLF4 1 dataset

ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 134 bp overlap

KLF5 1 dataset

Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap

MAZ 1 dataset

Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap

MED1 1 dataset

ChIP VCaP_Darolutamide GSE148358.MED1.VCaP_Darolutamide 188 bp overlap

NANOG 5 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 310 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 120 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 292 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 190 bp overlap

ChIP hESC GSE18292.NANOG.hESC 93 bp overlap

NFYA 2 datasets

Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap

Motif ES_0h ES_0h-NFYA_MA0060.4 8 bp overlap

NFYC 2 datasets

Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap

Motif ES_0h ES_0h-NFYC_MA1644.2 7 bp overlap

PATZ1 1 dataset

Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap

POU1F1 2 datasets

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap

POU2F1 2 datasets

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap

POU2F1::SOX2 2 datasets

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap

POU2F2 2 datasets

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap

POU2F3 2 datasets

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap

POU3F1 2 datasets

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap

POU3F2 3 datasets

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap

ChIP hiPSC_SGC0946 GSE149017.POU3F2.hiPSC_SGC0946 340 bp overlap

POU3F4 2 datasets

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap

POU5F1 11 datasets

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 295 bp overlap

Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 317 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 310 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 400 bp overlap

ChIP SKM-1 GSE93706.POU5F1.SKM-1 373 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 144 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 400 bp overlap

ChIP hiPSC GSE149017.POU5F1.hiPSC 245 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 244 bp overlap

POU5F1B 2 datasets

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 369 bp overlap

PRDM14 2 datasets

ChIP hESC GSE22767.PRDM14.hESC 283 bp overlap

ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 291 bp overlap

PRDM15 2 datasets

ChIP Hep-G2 ENCSR011INW.PRDM15.Hep-G2 129 bp overlap

ChIP WTC11 ENCFF108TMF 257 bp overlap

Pou5f1::Sox2 2 datasets

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap

Prdm14 1 dataset

Motif ES_0h ES_0h-Prdm14_MA1998.2 8 bp overlap

RELA 1 dataset

ChIP MCF-7_E2_45m GSE67295.RELA.MCF-7_E2_45m 102 bp overlap

SIX2 1 dataset

ChIP HEK GSE73865.SIX2.HEK 211 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 170 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 282 bp overlap

SP4 1 dataset

Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap

SP5 1 dataset

Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap

SPIB 2 datasets

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap

STAT1 1 dataset

Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap

Stat5a::Stat5b 1 dataset

Motif ES_0h ES_0h-Stat5aStat5b_MA0519.2 9 bp overlap

Thap11 2 datasets

Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap

ZBTB21 1 dataset

ChIP WTC11 ENCFF677ZYY 338 bp overlap

ZBTB24 2 datasets

Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap

Motif ES_0h ES_0h-ZBTB24_MA2330.1 10 bp overlap

ZKSCAN5 2 datasets

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap

Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF148 1 dataset

Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap

ZNF213 2 datasets

Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap

Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap

ZNF320 2 datasets

Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap

Motif ES_0h ES_0h-ZNF320_MA1976.2 20 bp overlap

ZNF460 1 dataset

Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap

ZNF667 2 datasets

Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap

Motif ES_0h ES_0h-ZNF667_MA1984.2 11 bp overlap

ZNF682 1 dataset

Motif ES_0h ES_0h-ZNF682_MA1599.2 11 bp overlap

ZNF737 1 dataset

ChIP Hep-G2 ENCSR127IHN.ZNF737.Hep-G2 245 bp overlap

Zfp809 2 datasets

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap

Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap