chrX : 56,728,918 – 56,729,027
109 bp 61 TFs 1 linked gene
This 109 bp open chromatin element is linked to NBDY and is bound by 61 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NBDY 214 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:56,723,918 – 56,734,027
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 109 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 109 bp overlap
BCL6 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 109 bp overlap
ChIP CD4 GSE59933.BCL6.CD4 77 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 109 bp overlap
BRD4 2 datasets
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 61 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 54 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 64 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 109 bp overlap
EGR1 10 datasets
ChIP GM12878 ENCFF092DJY 109 bp overlap
ChIP GM12878 ENCSR000BMQ.EGR1.GM12878 109 bp overlap
ChIP HCT-116 ENCSR000BRZ.EGR1.HCT-116 109 bp overlap
ChIP HCT116 ENCFF456NPQ 109 bp overlap
ChIP HL-60_PMA GSE106359.EGR1.HL-60_PMA 109 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 109 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 109 bp overlap
ChIP K562 ENCFF006PJY 109 bp overlap
ChIP fibroblast_DOX-24h GSE134924.EGR1.fibroblast_DOX-24h 109 bp overlap
ChIP fibroblast_DOX-CLOB-24h GSE134924.EGR1.fibroblast_DOX-CLOB-24h 109 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 109 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 60 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 81 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 70 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 65 bp overlap
FOXA1 10 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 109 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 109 bp overlap
ChIP LNCaP GSE52725.FOXA1.LNCaP 68 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 109 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 95 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 109 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 109 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 109 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 109 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 109 bp overlap
FOXA2 4 datasets
ChIP KerCT GSE90454.FOXA2.KerCT 109 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 109 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 109 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 109 bp overlap
FOXL2 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 109 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 109 bp overlap
FOXP1 1 dataset
ChIP U2932 ERP010999.FOXP1.U2932 109 bp overlap
GABPA 1 dataset
ChIP K562 ENCFF139LXS 109 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 81 bp overlap
HOXB13 12 datasets
ChIP 22Rv1 GSE129951.HOXB13.22Rv1 109 bp overlap
ChIP LNCaP GSE56288.HOXB13.LNCaP 109 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 79 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 109 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 103 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 109 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 97 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 76 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 109 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 109 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 109 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 109 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 109 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 109 bp overlap
INTS13 1 dataset
ChIP HL-60_PMA GSE106359.INTS13.HL-60_PMA 101 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 102 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 52 bp overlap
JUN 1 dataset
ChIP A549 ENCFF846DUV 76 bp overlap
KLF10 2 datasets
ChIP HEK293 ENCFF326EGX 109 bp overlap
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 109 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 109 bp overlap
KLF4 2 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 50 bp overlap
ChIP PDAC GSE64557.KLF4.PDAC 109 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 109 bp overlap
KLF9 2 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 109 bp overlap
ChIP HEK293 ENCFF588INF 109 bp overlap
MED1 1 dataset
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 109 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 58 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 109 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 109 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 108 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 109 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 109 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 64 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 86 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 109 bp overlap
RCOR1 2 datasets
ChIP HeLa GSE45441.RCOR1.HeLa 109 bp overlap
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 109 bp overlap
RUNX1 3 datasets
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 109 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 109 bp overlap
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 109 bp overlap
RUVBL2 1 dataset
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 109 bp overlap
SMARCC1 1 dataset
ChIP SCCOHT-1 GSE117734.SMARCC1.SCCOHT-1 109 bp overlap
SP1 2 datasets
ChIP A-549 ENCSR000BPE.SP1.A-549 109 bp overlap
ChIP HEK293T ERP007114.SP1.HEK293T 109 bp overlap
SP2 1 dataset
ChIP HEK293 ENCSR807LQP.SP2.HEK293 109 bp overlap
SP3 2 datasets
ChIP HEK293 ENCFF087XLA 76 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 109 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 64 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 63 bp overlap
STAG2 2 datasets
ChIP HCAEC GSE101921.STAG2.HCAEC 84 bp overlap
ChIP MCF-10A GSE101921.STAG2.MCF-10A 109 bp overlap
STAT3 5 datasets
ChIP HeLa-S3 ENCFF655DGU 109 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 52 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 109 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 109 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 109 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 109 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 69 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 109 bp overlap
ZBTB11 1 dataset
ChIP HEK293 ENCSR882ZTS.ZBTB11.HEK293 66 bp overlap
ZBTB40 1 dataset
ChIP GM12878 ENCSR189YYK.ZBTB40.GM12878 109 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 109 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 109 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCFF847JIE 77 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 109 bp overlap
ZFP91 2 datasets
ChIP K-562 ENCSR898XMH.ZFP91.K-562 109 bp overlap
ChIP K562 ENCFF501CDP 109 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF169LZT 62 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 69 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 109 bp overlap
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