chrX : 27,883,497 – 27,883,897
400 bp 90 TFs 0 linked genes
This 400 bp open chromatin element has no linked target genes and is bound by 90 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:27,878,497 – 27,888,897
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 283 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 101 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 400 bp overlap
BARX1 2 datasets
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 105 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 205 bp overlap
BSX 2 datasets
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 205 bp overlap
DLX1 2 datasets
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap
DLX6 2 datasets
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap
DUX4 3 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Dlx2 2 datasets
Motif DE_36h DE_36h-Dlx2_MA0885.3 8 bp overlap
Motif DE_60h DE_60h-Dlx2_MA0885.3 8 bp overlap
Dlx3 2 datasets
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap
Dlx4 2 datasets
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap
Dlx5 2 datasets
Motif DE_36h DE_36h-Dlx5_MA1476.3 8 bp overlap
Motif DE_60h DE_60h-Dlx5_MA1476.3 8 bp overlap
EN2 2 datasets
Motif DE_36h DE_36h-EN2_MA0642.3 7 bp overlap
Motif DE_60h DE_60h-EN2_MA0642.3 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 362 bp overlap
FOSL2 4 datasets
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
Motif DE_36h DE_36h-FOSL2_MA0478.2 10 bp overlap
Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap
ChIP hESC GSE69539.FOSL2.hESC 156 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 267 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 400 bp overlap
ChIP DE DE-FOXA2-2 400 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 327 bp overlap
FOXB1 3 datasets
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
Motif DE_36h DE_36h-FOXB1_MA0845.1 11 bp overlap
Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap
Foxl2 3 datasets
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
Motif DE_36h DE_36h-Foxl2_MA1607.2 10 bp overlap
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
GATA1::TAL1 2 datasets
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 5 datasets
Motif DE_12h DE_12h-GATA2_MA0036.4 7 bp overlap
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP ESF GSE108408.GATA2.ESF 171 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 293 bp overlap
GATA4 10 datasets
ChIP A-549 GSE85002.GATA4.A-549 263 bp overlap
ChIP DE DE-GATA4-1 400 bp overlap
ChIP DE DE-GATA4-2 400 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 400 bp overlap
ChIP foregut GSE117136.GATA4.foregut 400 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 400 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 357 bp overlap
GATA6 19 datasets
ChIP AGS GSE51705.GATA6.AGS 200 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 161 bp overlap
ChIP DE DE-GATA6-1 400 bp overlap
ChIP DE DE-GATA6-2 400 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 400 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 400 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 400 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 400 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 400 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 400 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 400 bp overlap
ChIP foregut GSE117136.GATA6.foregut 400 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 400 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 400 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 297 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 360 bp overlap
GBX1 2 datasets
Motif DE_36h DE_36h-GBX1_MA0889.2 7 bp overlap
Motif DE_60h DE_60h-GBX1_MA0889.2 7 bp overlap
GBX2 2 datasets
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap
Gata3 3 datasets
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HESX1 2 datasets
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap
HOXA7 2 datasets
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap
HSF2 3 datasets
Motif DE_12h DE_12h-HSF2_MA0770.1 13 bp overlap
Motif DE_36h DE_36h-HSF2_MA0770.1 13 bp overlap
Motif DE_60h DE_60h-HSF2_MA0770.1 13 bp overlap
Hnf1A 3 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
ISL2 2 datasets
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 327 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 311 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 400 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 255 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 380 bp overlap
JUNB 1 dataset
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 144 bp overlap
KLF16 1 dataset
Motif DE_36h DE_36h-KLF16_MA0741.1 11 bp overlap
LBX1 2 datasets
Motif DE_36h DE_36h-LBX1_MA0618.2 7 bp overlap
Motif DE_60h DE_60h-LBX1_MA0618.2 7 bp overlap
LBX2 2 datasets
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap
LHX2 2 datasets
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap
LHX9 2 datasets
Motif DE_36h DE_36h-LHX9_MA0701.3 7 bp overlap
Motif DE_60h DE_60h-LHX9_MA0701.3 7 bp overlap
Lef1 3 datasets
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif DE_36h DE_36h-Lef1_MA0768.3 8 bp overlap
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
Lhx1 2 datasets
Motif DE_36h DE_36h-Lhx1_MA1518.3 10 bp overlap
Motif DE_60h DE_60h-Lhx1_MA1518.3 10 bp overlap
MSX1 2 datasets
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap
MSX2 2 datasets
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap
MTA2 3 datasets
ChIP GM12878 ENCFF615CWQ 185 bp overlap
ChIP GM12878 ENCFF615CWQ 297 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 400 bp overlap
Msx3 2 datasets
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCFF065NZG 300 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 354 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 268 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 400 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 316 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 383 bp overlap
NFATC3 1 dataset
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 224 bp overlap
NFIA 2 datasets
Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap
Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap
NFIC 3 datasets
Motif DE_36h DE_36h-NFIC_MA1527.2 15 bp overlap
Motif DE_60h DE_60h-NFIC_MA1527.2 15 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 183 bp overlap
NFIX 2 datasets
Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap
Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap
Nobox 2 datasets
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap
PHOX2A 3 datasets
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
POU2F2 2 datasets
Motif DE_36h DE_36h-POU2F2_MA0507.3 13 bp overlap
Motif DE_60h DE_60h-POU2F2_MA0507.3 13 bp overlap
POU5F1 6 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 359 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 360 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 362 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 124 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 400 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 204 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 310 bp overlap
PRRX2 2 datasets
Motif DE_36h DE_36h-PRRX2_MA0075.4 7 bp overlap
Motif DE_60h DE_60h-PRRX2_MA0075.4 7 bp overlap
Pou5f1::Sox2 3 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_60h DE_60h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 333 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 344 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 338 bp overlap
RAX 2 datasets
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 136 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 249 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 219 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 4 datasets
ChIP HGrC1_C134W GSE138496.SMAD2-3.HGrC1_C134W 126 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 400 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 400 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 400 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 400 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 400 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 400 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 400 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 390 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 400 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 369 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 400 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 364 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 246 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 400 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 366 bp overlap
SP1 2 datasets
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 154 bp overlap
SP4 1 dataset
Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 315 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 237 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 400 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 400 bp overlap
TBX5 1 dataset
Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap
TCF7L1 3 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_60h DE_60h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 3 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_36h DE_36h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 150 bp overlap
TRPS1 3 datasets
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Wt1 4 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
ZBTB26 3 datasets
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_36h DE_36h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap
ZNF135 3 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
ZNF148 1 dataset
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF217 1 dataset
ChIP GM12878 ENCSR764CZW.ZNF217.GM12878 274 bp overlap
ZNF281 1 dataset
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ZNF324 3 datasets
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
Motif DE_36h DE_36h-ZNF324_MA1977.2 14 bp overlap
Motif DE_60h DE_60h-ZNF324_MA1977.2 14 bp overlap
ZNF460 3 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_36h DE_36h-ZNF460_MA1596.1 16 bp overlap
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
ZNF75A 3 datasets
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_60h DE_60h-ZNF75A_MA2097.1 12 bp overlap
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