chr20 : 51,028,741 – 51,029,299
558 bp 50 TFs 1 linked gene
This 558 bp open chromatin element is linked to KCNG1 and is bound by 50 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KCNG1 5.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:51,023,741 – 51,034,299
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 320 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 67 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 234 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 206 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 485 bp overlap
CTCF 72 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 191 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 373 bp overlap
ChIP H1 ENCFF764RHO 92 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 201 bp overlap
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 344 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 174 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 118 bp overlap
ChIP IMR-90 GSE43070.CTCF.IMR-90 119 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 113 bp overlap
ChIP K562 ENCFF400DFR 241 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 221 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 91 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 127 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 160 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 181 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 160 bp overlap
ChIP MCF-7 ENCFF162GNE 245 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF198DQX 112 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF494VXA 112 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 237 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 144 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 157 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 113 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 273 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 98 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 160 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 57 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 240 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 104 bp overlap
ChIP Peyers-patch ENCSR419ANE.CTCF.Peyers-patch 140 bp overlap
ChIP SK-N-SH ENCFF731NJX 251 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 142 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 247 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 150 bp overlap
ChIP T-47D_serum GSE120162.CTCF.T-47D_serum 207 bp overlap
ChIP VCaP ENCFF858YQT 447 bp overlap
ChIP VCaP ENCFF858YQT 168 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 558 bp overlap
ChIP VCaP_ETOH GSE84432.CTCF.VCaP_ETOH 145 bp overlap
ChIP VCaP_R1881 GSE84432.CTCF.VCaP_R1881 173 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 84 bp overlap
ChIP brain ENCFF099ASU 256 bp overlap
ChIP chondrocyte ENCFF134ORZ 327 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 119 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 235 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 88 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 321 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 90 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 487 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 251 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 86 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 205 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte ENCFF667ULX 325 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 558 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 239 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 161 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 180 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 372 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 90 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 211 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 556 bp overlap
ChIP neuron GSE115407.CTCF.neuron 181 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 160 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 222 bp overlap
DUX4 1 dataset
Motif DE_24h DE_24h-DUX4_MA0468.1 11 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 171 bp overlap
ESR1 6 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 235 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 184 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 178 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 165 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 210 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 168 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_24h DE_24h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 11 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 258 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 419 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 220 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 401 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 241 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 301 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 278 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 261 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 394 bp overlap
ChIP keratinocyte ENCFF070STK 448 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 271 bp overlap
EZH2_phosphoT487 3 datasets
ChIP HCT-116 ENCSR429CLV.EZH2_phosphoT487.HCT-116 317 bp overlap
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 558 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 279 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 271 bp overlap
GATA6 7 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 321 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 380 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 427 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 259 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 398 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 373 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 261 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 231 bp overlap
HDAC2 2 datasets
ChIP K-562 GSE140325.HDAC2.K-562 92 bp overlap
ChIP RH4_Entinostat-6H_bioMerck GSE116344.HDAC2.RH4_Entinostat-6H_bioMerck 146 bp overlap
HNRNPLL 2 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 243 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 173 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 558 bp overlap
ChIP K562 ENCFF348IBL 505 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 259 bp overlap
MAX 1 dataset
ChIP melanocyte GSE115845.MAX.melanocyte 185 bp overlap
MAZ 1 dataset
ChIP K-562 ENCSR163IUV.MAZ.K-562 219 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 182 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 394 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 190 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 510 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 188 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 345 bp overlap
PRDM9 1 dataset
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Prdm14 1 dataset
Motif DE_24h DE_24h-Prdm14_MA1998.2 8 bp overlap
RAD21 17 datasets
ChIP GP5D GSE51234.RAD21.GP5D 265 bp overlap
ChIP H1 ENCFF698EWO 115 bp overlap
ChIP H1 ENCFF967OJF 78 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 217 bp overlap
ChIP HeLa-S3 ENCFF775CHI 231 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 106 bp overlap
ChIP MCF-7 ENCFF694KOM 337 bp overlap
ChIP MCF-7 ENCFF724VCQ 257 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 326 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 225 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 145 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 182 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 63 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 149 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 145 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 432 bp overlap
ChIP neural cell ENCFF564MOT 505 bp overlap
RNF2 3 datasets
ChIP K-562 ENCSR138FUZ.RNF2.K-562 325 bp overlap
ChIP K562 ENCFF130DMJ 341 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 136 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 298 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 325 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 368 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 251 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 416 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 391 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 242 bp overlap
SMARCA4 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 558 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 519 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 259 bp overlap
SMC3 4 datasets
ChIP GP5D GSE51234.SMC3.GP5D 256 bp overlap
ChIP HeLa-S3 ENCFF992MML 261 bp overlap
ChIP HeLa-S3 ENCSR000ECS.SMC3.HeLa-S3 168 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 558 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 205 bp overlap
SRF 1 dataset
ChIP K-562 ENCSR582IAO.SRF.K-562 129 bp overlap
STAG1 6 datasets
ChIP HMEC-1 GSE101921.STAG1.HMEC-1 154 bp overlap
ChIP HeLa GSE126990.STAG1.HeLa 247 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 247 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 210 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 207 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 59 bp overlap
STAG2 1 dataset
ChIP HMEC-1 GSE101921.STAG2.HMEC-1 157 bp overlap
SUZ12 1 dataset
ChIP K-562 ENCSR412CTM.SUZ12.K-562 144 bp overlap
TCF12 1 dataset
ChIP Hep-G2 ENCSR000BJG.TCF12.Hep-G2 152 bp overlap
TCF7L2 1 dataset
ChIP HeLa-S3 ENCFF673QAB 115 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 197 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 336 bp overlap
ZBTB48 1 dataset
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 302 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 442 bp overlap
ChIP K-562 ENCSR776CYN.ZFP36.K-562 50 bp overlap
ZNF263 6 datasets
ChIP HEK293 ENCFF336CWQ 216 bp overlap
ChIP HEK293 ENCFF336CWQ 522 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 259 bp overlap
ChIP HepG2 ENCFF626SSV 319 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 351 bp overlap
ChIP K562 ENCFF650LPZ 298 bp overlap
ZNF701 1 dataset
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
ZNF791 1 dataset
ChIP HEK293 ENCSR775HFF.ZNF791.HEK293 221 bp overlap
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