chr1 : 237,016,710 – 237,017,127

417 bp 66 TFs 0 linked genes

This 417 bp open chromatin element has no linked target genes and is bound by 66 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

66 transcription factors

AR 1 dataset

ChIP LNCaP GSE80256.AR.LNCaP 195 bp overlap

ASH2L 2 datasets

ChIP H1 ENCFF399KAM 417 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 210 bp overlap

BCOR 1 dataset

ChIP WA01 GSE104690.BCOR.WA01 176 bp overlap

CHD1 1 dataset

ChIP WA01 ENCSR000AQK.CHD1.WA01 145 bp overlap

CTCF 1 dataset

ChIP H9 ENCFF152GTF 276 bp overlap

Dux 2 datasets

Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap

Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap

E2F6 1 dataset

ChIP WA01 ENCSR000BSI.E2F6.WA01 129 bp overlap

ESR1 1 dataset

ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 228 bp overlap

ESR2 2 datasets

Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap

Motif ES_0h ES_0h-ESR2_MA0258.2 15 bp overlap

ESRRA 2 datasets

Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap

Motif ES_0h ES_0h-ESRRA_MA0592.4 9 bp overlap

ESRRB 2 datasets

Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap

Motif ES_0h ES_0h-ESRRB_MA0141.4 10 bp overlap

Esrrg 2 datasets

Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap

Motif ES_0h ES_0h-Esrrg_MA0643.2 9 bp overlap

FOXE1 1 dataset

Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 124 bp overlap

GATA3 1 dataset

ChIP T-47D ENCSR000BMX.GATA3.T-47D 128 bp overlap

GRHL2 1 dataset

ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 203 bp overlap

Hand1 2 datasets

Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap

Motif ES_0h ES_0h-Hand1_MA2123.1 9 bp overlap

Hand1::Tcf3 2 datasets

Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap

Motif ES_0h ES_0h-Hand1Tcf3_MA0092.2 9 bp overlap

JUN 2 datasets

ChIP ESC S24-ESC-d0-JUN-exp1 417 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 267 bp overlap

Mecom 2 datasets

Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap

Motif ES_0h ES_0h-Mecom_MA0029.2 11 bp overlap

NANOG 6 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 417 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 215 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 417 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 372 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 257 bp overlap

ChIP hESC GSE18292.NANOG.hESC 126 bp overlap

NR2C1 2 datasets

Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap

Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap

NR2C2 2 datasets

Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap

Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap

NR2F1 2 datasets

Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap

Motif ES_0h ES_0h-NR2F1_MA0017.3 12 bp overlap

NR2F2 2 datasets

Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap

Motif ES_0h ES_0h-NR2F2_MA1111.2 7 bp overlap

NR4A1 2 datasets

Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap

Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap

NR4A2 2 datasets

Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap

Motif ES_0h ES_0h-NR4A2_MA0160.3 8 bp overlap

Nr1H2 2 datasets

Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap

Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 2 datasets

Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap

Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 2 datasets

Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap

Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap

POLR2A 1 dataset

ChIP H1 ENCFF566JSR 380 bp overlap

POU1F1 2 datasets

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap

POU2F1 2 datasets

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap

POU2F1::SOX2 2 datasets

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap

POU2F2 2 datasets

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap

POU3F1 2 datasets

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap

POU3F2 2 datasets

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap

POU3F3 2 datasets

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap

POU5F1 4 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 417 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 326 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 128 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 295 bp overlap

POU5F1B 2 datasets

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap

PRDM1 2 datasets

Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap

Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap

Pgr 2 datasets

Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap

Motif ES_0h ES_0h-Pgr_MA2323.1 17 bp overlap

Pou5f1::Sox2 2 datasets

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap

Ppara 2 datasets

Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap

Motif ES_0h ES_0h-Ppara_MA2338.1 7 bp overlap

RAD21 1 dataset

ChIP H1 ENCFF967OJF 206 bp overlap

SMAD2 3 datasets

Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap

Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap

ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 296 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 258 bp overlap

SMAD2_3 1 dataset

ChIP ESC S33-ESC-d0-SMAD2_3-exp2 258 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 417 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 417 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 142 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 106 bp overlap

SMARCC1 3 datasets

ChIP ESC S25-ESC-d0-BAF155-exp1 309 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 386 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 404 bp overlap

SOX10 2 datasets

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 125 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 356 bp overlap

SOX4 2 datasets

Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap

Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 171 bp overlap

SPIC 1 dataset

Motif ES_0h ES_0h-SPIC_MA0687.2 13 bp overlap

Sox6 2 datasets

Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap

Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap

Stat4 2 datasets

Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap

Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap

YY1 2 datasets

ChIP WA01 ENCSR000BKD.YY1.WA01 135 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 156 bp overlap

ZIM3 1 dataset

Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap

ZNF354A 1 dataset

Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap

ZNF418 2 datasets

Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap

Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 416 bp overlap

ZNF684 1 dataset

Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap

ZNF766 1 dataset

Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap

ZNF768 2 datasets

Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap

Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap