chr15 : 67,070,163 67,070,402
239 bp 48 TFs 2 linked genes
This 239 bp open chromatin element is linked to SMAD3-DT and SMAD3 and is bound by 48 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SMAD3-DT 4.9 kb Proximal Proximity
SMAD3 6.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:67,065,163 – 67,075,402
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
AR 6 datasets
ChIP DU145 GSE47987.AR.DU145 135 bp overlap
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 121 bp overlap
ChIP DU145_FOXA1 GSE47987.AR.DU145_FOXA1 87 bp overlap
ChIP DU145_FOXA1_ARQ6540X GSE47987.AR.DU145_FOXA1_ARQ6540X 128 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 154 bp overlap
ChIP prostate_DHT GSE61838.AR.prostate_DHT 111 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE104545.ARID1A.RMG-I 239 bp overlap
BRD2 2 datasets
ChIP K-562_iBET-IFNG GSE138084.BRD2.K-562_iBET-IFNG 171 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 117 bp overlap
BRD4 3 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 216 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 239 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 119 bp overlap
CHD1 1 dataset
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 202 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_1H GSE41166.ETS1.HUVEC-C_VEGF_1H 76 bp overlap
FOXA1 2 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 78 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 136 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 233 bp overlap
ChIP DE DE-FOXA2-2 161 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 56 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 167 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 239 bp overlap
ChIP DE DE-GATA4-2 239 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 234 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 239 bp overlap
ChIP DE DE-GATA6-2 239 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 238 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 239 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 239 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 239 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 239 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 239 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 239 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 239 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 165 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 239 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 232 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 120 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 239 bp overlap
MAX 1 dataset
ChIP A-549 ENCSR000BTJ.MAX.A-549 92 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 231 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 239 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 239 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 215 bp overlap
NCAPH2 2 datasets
ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 239 bp overlap
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 239 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 200 bp overlap
NR3C1 17 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 161 bp overlap
ChIP A-549 ENCSR000BHG.NR3C1.A-549 132 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 107 bp overlap
ChIP BEAS-2B_DEX GSE125623.NR3C1.BEAS-2B_DEX 115 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 134 bp overlap
ChIP IMR-90 ERP007093.NR3C1.IMR-90 66 bp overlap
ChIP IMR-90_GLUCC ERP007081.NR3C1.IMR-90_GLUCC 132 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 71 bp overlap
ChIP Ishikawa_Dex GSE109891.NR3C1.Ishikawa_Dex 59 bp overlap
ChIP MCF-10A_DEX_60min GSE102355.NR3C1.MCF-10A_DEX_60min 235 bp overlap
ChIP MCF-10A_EGF_DEX_20min GSE102355.NR3C1.MCF-10A_EGF_DEX_20min 211 bp overlap
ChIP MDA-MB-231 GSE152203.NR3C1.MDA-MB-231 148 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 147 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 74 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 186 bp overlap
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 173 bp overlap
ChIP U2OS_siHic5siNS GSE109383.NR3C1.U2OS_siHic5siNS 201 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 224 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 239 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 239 bp overlap
POLR2A 3 datasets
ChIP gastrocnemius medialis ENCFF081DTE 216 bp overlap
ChIP gastrocnemius medialis ENCFF081DTE 183 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 239 bp overlap
RELA 6 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 211 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 224 bp overlap
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 217 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 150 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 200 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 158 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 123 bp overlap
SIN3A 2 datasets
ChIP PANC-1 ENCSR000BOW.SIN3A.PANC-1 158 bp overlap
ChIP Panc1 ENCFF898EEQ 182 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 239 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 137 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 125 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 102 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 195 bp overlap
SMARCA4 1 dataset
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 239 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 228 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 239 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 228 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 239 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 235 bp overlap
TFAP4 1 dataset
ChIP HepG2 ENCFF932XOY 203 bp overlap
ZBTB33 2 datasets
ChIP HepG2 ENCFF778UKV 105 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 239 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 156 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 239 bp overlap
ZNF205 1 dataset
ChIP HepG2 ENCFF931LZG 142 bp overlap
ZNF417 2 datasets
ChIP HEK293T GSE78099.ZNF417.HEK293T 239 bp overlap
ChIP WA01 GSE144149.ZNF417.WA01 125 bp overlap
ZNF490 1 dataset
ChIP HEK293 GSE76494.ZNF490.HEK293 121 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 101 bp overlap