chr13 : 102,598,190 – 102,598,515
325 bp 61 TFs 1 linked gene
This 325 bp open chromatin element is linked to TPP2 and is bound by 61 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TPP2 1.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:102,593,190 – 102,603,515
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AR 1 dataset
ChIP LTAD_EtOH GSE94577.AR.LTAD_EtOH 168 bp overlap
ARID2 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 251 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 325 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 221 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 233 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 195 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 200 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 325 bp overlap
CTBP1 4 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 215 bp overlap
ChIP K562 ENCFF403WPG 325 bp overlap
ChIP MCF-7 ENCFF969VBY 219 bp overlap
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 205 bp overlap
E2F4 1 dataset
ChIP K-562 ENCSR000EWL.E2F4.K-562 150 bp overlap
EGR1 1 dataset
ChIP K562 ENCFF895KGN 91 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 142 bp overlap
ETS1 1 dataset
ChIP HEY-A8 GSE101832.ETS1.HEY-A8 203 bp overlap
FOXA1 7 datasets
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 191 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 260 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 235 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 195 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 177 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 82 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 207 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 256 bp overlap
ChIP DE DE-FOXA2-1 286 bp overlap
GATA1 1 dataset
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 88 bp overlap
GATA2 2 datasets
ChIP TF1 GSE73207.GATA2.TF1 166 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 175 bp overlap
GATA3 5 datasets
ChIP MCF-7 ENCFF352QVM 318 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 148 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 171 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 169 bp overlap
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 277 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 262 bp overlap
ChIP DE DE-GATA4-1 214 bp overlap
ChIP DE DE-GATA4-2 284 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 217 bp overlap
ChIP DE DE-GATA6-2 325 bp overlap
HDAC1 4 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 114 bp overlap
ChIP K-562 ENCSR711VWL.HDAC1.K-562 261 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_4-OHT_clone14 188 bp overlap
ChIP MCF-7_parental GSE123284.HDAC1.MCF-7_parental 181 bp overlap
HMBOX1 1 dataset
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 268 bp overlap
HNF1B 1 dataset
ChIP Hep-G2 ENCSR127XTZ.HNF1B.Hep-G2 179 bp overlap
IKZF1 4 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 325 bp overlap
ChIP K562 ENCFF348IBL 169 bp overlap
ChIP K562 ENCFF771OHZ 325 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 276 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 247 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 302 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 319 bp overlap
KDM1A 1 dataset
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 159 bp overlap
KMT2A 5 datasets
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 197 bp overlap
ChIP MOLM-13_HOTTIP-KO GSE114981.KMT2A.MOLM-13_HOTTIP-KO 187 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 245 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 325 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 281 bp overlap
MEN1 2 datasets
ChIP OCI-AML-3_DMSO GSE129636.MEN1.OCI-AML-3_DMSO 285 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 87 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 196 bp overlap
NFATC3 1 dataset
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 257 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 227 bp overlap
OVOL1 2 datasets
ChIP MCF-7 ENCFF537GWI 76 bp overlap
ChIP MCF-7 ENCSR829WBA.OVOL1.MCF-7 116 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 325 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 267 bp overlap
PRDM1 1 dataset
ChIP HEK293 GSE76494.PRDM1.HEK293 152 bp overlap
RCOR1 2 datasets
ChIP MCF-7 ENCSR391JII.RCOR1.MCF-7 184 bp overlap
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 278 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 198 bp overlap
REST 12 datasets
ChIP H1 ENCFF429RUE 178 bp overlap
ChIP HEK293 ENCFF073DOT 280 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 315 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 197 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 114 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 250 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 325 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 196 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 301 bp overlap
ChIP liver ENCFF240FWT 267 bp overlap
ChIP liver ENCSR893QWP.REST.liver 287 bp overlap
ChIP liver ENCSR867WPH.REST.liver 145 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 183 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 67 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 153 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 215 bp overlap
SMARCA4 9 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 325 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 63 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 295 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 325 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 300 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 287 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 320 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 112 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 325 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 192 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 280 bp overlap
SMC1A 1 dataset
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 132 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 231 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 129 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 203 bp overlap
TBP 1 dataset
ChIP GM12878 ENCFF571OXR 221 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 118 bp overlap
ZBED2 1 dataset
ChIP SUIT-2 GSE141606.ZBED2.SUIT-2 265 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 308 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 140 bp overlap
ZEB1 1 dataset
ChIP RKO GSE88734.ZEB1.RKO 234 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 267 bp overlap
ZNF263 2 datasets
ChIP HEK293 ENCFF336CWQ 325 bp overlap
ChIP HEK293T GSE78099.ZNF263.HEK293T 201 bp overlap
ZNF445 1 dataset
ChIP HEK293T GSE78099.ZNF445.HEK293T 252 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 169 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 267 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 321 bp overlap
ZNF652 1 dataset
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 194 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 269 bp overlap
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