chr13 : 99,974,409 – 99,974,618
209 bp 53 TFs 3 linked genes
This 209 bp open chromatin element is linked to ZIC5, ENSG00000288060, and ZIC2 and is bound by 53 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ZIC5 2.6 kb Proximal Proximity
ENSG00000288060 5.4 kb Proximal Proximity
ZIC2 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:99,969,409 – 99,979,618
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 140 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 209 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 194 bp overlap
BCL11B 1 dataset
ChIP HEK293 ENCSR770PQN.BCL11B.HEK293 209 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 209 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 143 bp overlap
CBX7 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 209 bp overlap
CHD1 1 dataset
ChIP H1 ENCFF998XEK 83 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 121 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 209 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 92 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 129 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 195 bp overlap
EZH2 8 datasets
ChIP GM23338 ENCFF613YON 55 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 77 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 209 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 209 bp overlap
ChIP fibroblast of lung ENCFF479BAW 68 bp overlap
ChIP hepatocyte ENCFF552DZB 170 bp overlap
ChIP neural progenitor cell ENCFF472NFV 209 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 209 bp overlap
EZH2_phosphoT487 2 datasets
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 209 bp overlap
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 209 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 177 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 120 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 195 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 184 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 209 bp overlap
JUN 4 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 209 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 209 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 209 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 209 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 83 bp overlap
KLF4 1 dataset
ChIP WA09 GSE105028.KLF4.WA09 142 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCFF994GSG 56 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 203 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 209 bp overlap
ChIP H1 ENCFF747ZPQ 176 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 209 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 171 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 209 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 209 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 209 bp overlap
ChIP hESC GSE20650.NANOG.hESC 178 bp overlap
ChIP hESC GSE18292.NANOG.hESC 94 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 192 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 187 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 209 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 209 bp overlap
PCGF2 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 209 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 85 bp overlap
POU5F1 5 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 209 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 195 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 181 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 191 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 209 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 117 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 55 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 182 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 209 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 209 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 209 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 209 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 209 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 130 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 209 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 160 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 209 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 209 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 209 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 209 bp overlap
SMARCC1 3 datasets
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 182 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 101 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 209 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 127 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 209 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 209 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 209 bp overlap
ChIP WTC11 ENCFF688PEU 51 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 209 bp overlap
SUZ12 4 datasets
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 185 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 209 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 209 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 209 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 209 bp overlap
TBP 4 datasets
ChIP hESC GSE122298.TBP.hESC 209 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 160 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 209 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 145 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 209 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 209 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 209 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 143 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 113 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF427SDV 100 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 209 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 80 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 209 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 157 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 142 bp overlap
ZSCAN5C 1 dataset
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 79 bp overlap
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