chr13 : 98,320,222 98,321,259
1,037 bp 79 TFs 2 linked genes
This 1.0 kb open chromatin element is linked to FARP1 and STK24 and is bound by 79 transcription factors.
Linked Genes
2 genes
Link type
Gene Expression Dist. to TSS Distance Link type
FARP1 177.3 kb Distal Multiome+HiCAR
STK24 256.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:98,315,222 – 98,326,259
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
BCL6B 1 dataset
Motif DE_72h DE_72h-BCL6B_MA0731.1 17 bp overlap
CREB1 1 dataset
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 195 bp overlap
EOMES 3 datasets
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 178 bp overlap
ChIP hESC GSE26097.EOMES.hESC 220 bp overlap
ESR1 5 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 224 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 171 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 196 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 205 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 203 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 260 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 408 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 193 bp overlap
ChIP DE DE-FOXA2-1 895 bp overlap
ChIP DE DE-FOXA2-2 765 bp overlap
GATA2 5 datasets
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 293 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 357 bp overlap
GATA3 7 datasets
ChIP MCF-7 GSE122847.GATA3.MCF-7 396 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 228 bp overlap
ChIP MCF-7_DMSO GSE29073.GATA3.MCF-7_DMSO 128 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 174 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 170 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 182 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 264 bp overlap
GATA4 11 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 245 bp overlap
ChIP DE DE-GATA4-1 999 bp overlap
ChIP DE DE-GATA4-2 935 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 182 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 332 bp overlap
ChIP foregut GSE117136.GATA4.foregut 1002 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 918 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 534 bp overlap
GATA5 4 datasets
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 17 datasets
ChIP AGS GSE51705.GATA6.AGS 672 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 496 bp overlap
ChIP DE DE-GATA6-1 937 bp overlap
ChIP DE DE-GATA6-2 928 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 865 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 174 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 194 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 925 bp overlap
ChIP foregut GSE117136.GATA6.foregut 882 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 560 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 801 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 687 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 452 bp overlap
GRHL1 1 dataset
Motif DE_72h DE_72h-GRHL1_MA0647.2 10 bp overlap
Gata3 4 datasets
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HNF4A 1 dataset
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 79 bp overlap
IRF9 1 dataset
Motif DE_72h DE_72h-IRF9_MA0653.1 15 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 137 bp overlap
MGA 1 dataset
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NFATC3 2 datasets
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NOTCH3 2 datasets
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 146 bp overlap
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 178 bp overlap
NR1I2 1 dataset
Motif DE_72h DE_72h-NR1I2_MA1533.2 15 bp overlap
Nfat5 2 datasets
Motif DE_60h DE_60h-Nfat5_MA0606.3 8 bp overlap
Motif DE_72h DE_72h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 2 datasets
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
Nr2F6 1 dataset
Motif DE_72h DE_72h-Nr2F6_MA0728.1 15 bp overlap
PRDM9 1 dataset
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RBM22 1 dataset
ChIP HepG2 ENCFF561IAJ 413 bp overlap
RFX1 1 dataset
Motif DE_72h DE_72h-RFX1_MA0509.3 16 bp overlap
RFX2 1 dataset
Motif DE_72h DE_72h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_72h DE_72h-RFX3_MA0798.3 16 bp overlap
RORB 1 dataset
Motif DE_72h DE_72h-RORB_MA1150.2 10 bp overlap
Rfx6 1 dataset
Motif DE_72h DE_72h-Rfx6_MA1724.2 9 bp overlap
Runx1 2 datasets
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SMAD2 2 datasets
Motif DE_72h DE_72h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 227 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 961 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 777 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 851 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 207 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 323 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 323 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 186 bp overlap
SNAI2 1 dataset
ChIP PC-9_1DF GSE131687.SNAI2.PC-9_1DF 283 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 264 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 781 bp overlap
SP5 2 datasets
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SPDEF 1 dataset
Motif DE_72h DE_72h-SPDEF_MA0686.2 10 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHSPIB GSE56857.SPIB.OCI-Ly3_SHSPIB 212 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 437 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_6aa GSE139053.SS18-SSX.fibroblast_6aa 112 bp overlap
STAT3 2 datasets
Motif DE_60h DE_60h-STAT3_MA0144.3 9 bp overlap
Motif DE_72h DE_72h-STAT3_MA0144.3 9 bp overlap
Sox17 2 datasets
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
TBR1 1 dataset
Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX2 1 dataset
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX3 1 dataset
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TEAD4 3 datasets
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 483 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 504 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 155 bp overlap
TEF 1 dataset
Motif DE_72h DE_72h-TEF_MA0843.2 10 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 251 bp overlap
TFCP2 3 datasets
Motif DE_60h DE_60h-TFCP2_MA1968.2 9 bp overlap
Motif DE_72h DE_72h-TFCP2_MA1968.2 9 bp overlap
Motif DE_72h DE_72h-TFCP2_MA1968.2 9 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 170 bp overlap
TRPS1 5 datasets
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ChIP MCF-7 GSE133072.TRPS1.MCF-7 207 bp overlap
YY1AP1 2 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 648 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 528 bp overlap
ZNF317 1 dataset
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ZNF41 1 dataset
ChIP HEK293 GSE76494.ZNF41.HEK293 219 bp overlap
ZNF449 2 datasets
Motif DE_60h DE_60h-ZNF449_MA1656.2 10 bp overlap
Motif DE_72h DE_72h-ZNF449_MA1656.2 10 bp overlap
ZNF558 1 dataset
Motif DE_72h DE_72h-ZNF558_MA2335.1 29 bp overlap
ZNF582 1 dataset
Motif DE_72h DE_72h-ZNF582_MA1983.2 19 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 52 bp overlap
ZNF76 2 datasets
Motif DE_60h DE_60h-ZNF76_MA1716.2 17 bp overlap
Motif DE_72h DE_72h-ZNF76_MA1716.2 17 bp overlap
ZNF766 1 dataset
Motif DE_72h DE_72h-ZNF766_MA2098.1 9 bp overlap