chr13 : 55,564,065 – 55,564,684

619 bp 73 TFs 0 linked genes

This 619 bp open chromatin element has no linked target genes and is bound by 73 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

73 transcription factors

AR 1 dataset

ChIP WTC11 ENCFF267GQJ 317 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 201 bp overlap

Ahr::Arnt 2 datasets

Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap

Atoh1 1 dataset

Motif ES_0h ES_0h-Atoh1_MA1467.3 7 bp overlap

BCL6B 1 dataset

Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap

BHLHA15 1 dataset

Motif ES_0h ES_0h-BHLHA15_MA0607.2 10 bp overlap

BRD4 3 datasets

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 274 bp overlap

ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 294 bp overlap

ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 476 bp overlap

CHD1 1 dataset

ChIP WA01 ENCSR000AQK.CHD1.WA01 371 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 475 bp overlap

Crx 1 dataset

Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap

EMX1 1 dataset

ChIP WTC11 ENCFF692RZJ 399 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 210 bp overlap

ERG 1 dataset

ChIP WTC11 ENCFF011YUL 248 bp overlap

ETV5::FIGLA 1 dataset

Motif ES_0h ES_0h-ETV5FIGLA_MA1945.2 14 bp overlap

GATA6 6 datasets

ChIP DE_D1 S09-DE-d1-GATA6-exp1 613 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 559 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 344 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 501 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 573 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 597 bp overlap

GSC 1 dataset

Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap

HAND2 1 dataset

Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap

HSF1 1 dataset

ChIP MO91 GSE45852.HSF1.MO91 176 bp overlap

IRF2 1 dataset

Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap

JUND 1 dataset

ChIP WA01 ENCSR000BKP.JUND.WA01 130 bp overlap

KLF10 1 dataset

Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap

KLF14 1 dataset

Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap

MAX 1 dataset

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 376 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 273 bp overlap

Msgn1 1 dataset

Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap

NEUROD1 1 dataset

Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap

NEUROG2 2 datasets

Motif ES_0h ES_0h-NEUROG2_MA0669.1 10 bp overlap

Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap

NFATC4 1 dataset

ChIP WTC11 ENCFF744MZI 271 bp overlap

NFIA 1 dataset

Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap

NFIX 1 dataset

Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap

NR3C1 1 dataset

ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 224 bp overlap

Neurod2 1 dataset

Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap

Nr1h3::Rxra 1 dataset

Motif ES_0h ES_0h-Nr1h3Rxra_MA0494.2 16 bp overlap

OTX1 1 dataset

Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap

PITX1 1 dataset

Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap

PITX3 1 dataset

Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap

POLR2A 4 datasets

ChIP GM23338 ENCFF450WCS 387 bp overlap

ChIP H1 ENCFF566JSR 312 bp overlap

ChIP H1 ENCFF566JSR 449 bp overlap

ChIP H1 ENCFF833NJP 226 bp overlap

POU2F2 1 dataset

ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 163 bp overlap

POU4F1 1 dataset

Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 172 bp overlap

POU4F3 1 dataset

Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap

POU5F1 1 dataset

ChIP HUES-8 GSE109524.POU5F1.HUES-8 361 bp overlap

PRRX2 1 dataset

ChIP WTC11 ENCFF107JGJ 261 bp overlap

RARA 1 dataset

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 201 bp overlap

RHOXF1 1 dataset

Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap

RXR 1 dataset

ChIP LS180 GSE31939.RXR.LS180 112 bp overlap

SIX1 1 dataset

Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap

SIX2 1 dataset

Motif ES_0h ES_0h-SIX2_MA1119.2 11 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 459 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 619 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 183 bp overlap

SMARCA4 4 datasets

ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 263 bp overlap

ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 228 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 268 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 333 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 331 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 461 bp overlap

SOX2 3 datasets

ChIP HNSC GSE69479.SOX2.HNSC 519 bp overlap

ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 455 bp overlap

ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 215 bp overlap

SP5 1 dataset

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

SPI1 1 dataset

ChIP THP-1 GSE128834.SPI1.THP-1 137 bp overlap

STAT1::STAT2 1 dataset

Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap

Stat4 1 dataset

Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap

T 1 dataset

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 469 bp overlap

TAL1::TCF3 1 dataset

Motif ES_0h ES_0h-TAL1TCF3_MA0091.2 10 bp overlap

TCF21 1 dataset

Motif ES_0h ES_0h-TCF21_MA1568.2 10 bp overlap

TRIM28 1 dataset

ChIP AF22 GSE84259.TRIM28.AF22 255 bp overlap

TWIST1 1 dataset

Motif ES_0h ES_0h-TWIST1_MA1123.3 8 bp overlap

ZNF671 1 dataset

ChIP WTC11 ENCFF053HBV 265 bp overlap

ZNF680 2 datasets

Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap

Motif ES_0h ES_0h-ZNF680_MA1729.2 11 bp overlap

ZNF766 1 dataset

Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap

ZNF784 2 datasets

Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap

Motif ES_0h ES_0h-ZNF784_MA1717.2 8 bp overlap

ZSCAN21 2 datasets

Motif DE_12h DE_12h-ZSCAN21_MA2336.1 7 bp overlap

Motif ES_0h ES_0h-ZSCAN21_MA2336.1 7 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Zfp809 1 dataset

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap

Zic2 2 datasets

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap