chr12 : 127,389,881 – 127,390,204
323 bp 52 TFs 0 linked genes
This 323 bp open chromatin element has no linked target genes and is bound by 52 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:127,384,881 – 127,395,204
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
AR 4 datasets
ChIP A-375 GSE116189.AR.A-375 183 bp overlap
ChIP A-375_SLNCR GSE116189.AR.A-375_SLNCR 239 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 98 bp overlap
ChIP endometrial-stromal-cell GSE119432.AR.endometrial-stromal-cell 69 bp overlap
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 118 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 162 bp overlap
ARID2 2 datasets
ChIP Aska-SS GSE108025.ARID2.Aska-SS 216 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 197 bp overlap
ARNTL 2 datasets
ChIP U2OS GSE130602.ARNTL.U2OS 161 bp overlap
ChIP U2OS_DMSO GSE130506.ARNTL.U2OS_DMSO 161 bp overlap
BRD2 4 datasets
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD2.MDA-MB-231_MGSK2801 124 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_MGSK2801_rDNA 124 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 112 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 114 bp overlap
BRD4 17 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 197 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 197 bp overlap
ChIP MDA-MB-231_JQ1-neg_L GSE136151.BRD4.MDA-MB-231_JQ1-neg_L 60 bp overlap
ChIP MDA-MB-231_JQ1-pos_L GSE136151.BRD4.MDA-MB-231_JQ1-pos_L 121 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 118 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 118 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 161 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 161 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 141 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 191 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 215 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 174 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 154 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 109 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 161 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 141 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 165 bp overlap
BRD7 2 datasets
ChIP SUM159PT_DMSO GSE131097.BRD7.SUM159PT_DMSO 229 bp overlap
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 210 bp overlap
BRD9 4 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD9.MDA-MB-231_DMSO 174 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 219 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 140 bp overlap
ChIP Mel270 GSE124720.BRD9.Mel270 135 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 198 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 165 bp overlap
CRY2 1 dataset
ChIP U2OS GSE130602.CRY2.U2OS 191 bp overlap
CTCF 1 dataset
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 323 bp overlap
EHMT2 2 datasets
ChIP K-562 ENCSR175EOM.EHMT2.K-562 247 bp overlap
ChIP K562 ENCFF053BWO 145 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 129 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 173 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 217 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 135 bp overlap
JUND 2 datasets
ChIP H1 ENCFF010YXS 230 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 154 bp overlap
MED1 2 datasets
ChIP U-87MG GSE36354.MED1.U-87MG 108 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 139 bp overlap
MIER2 1 dataset
ChIP HepG2 ENCFF997QIX 184 bp overlap
MYC 2 datasets
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 117 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 153 bp overlap
NR3C1 3 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 238 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 260 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 79 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 93 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 110 bp overlap
PGR_B 1 dataset
ChIP hESC GSE62475.PGR_B.hESC 178 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 104 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 179 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 103 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 207 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 235 bp overlap
REST 69 datasets
ChIP A-549 ENCSR000BQP.REST.A-549 265 bp overlap
ChIP A-549 ENCSR892DRK.REST.A-549 254 bp overlap
ChIP A549 ENCFF148AIS 323 bp overlap
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
ChIP GM12878 ENCFF235NGC 181 bp overlap
ChIP GM12878 ENCFF943QPB 218 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 164 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 126 bp overlap
ChIP GM23338 ENCFF024TCL 180 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 323 bp overlap
ChIP GP5D GSE51234.REST.GP5D 323 bp overlap
ChIP GP5D_SIRAD21 GSE51234.REST.GP5D_SIRAD21 323 bp overlap
ChIP H1 ENCFF203SWY 323 bp overlap
ChIP H1 ENCFF429RUE 230 bp overlap
ChIP HCT-116 ENCSR000BVI.REST.HCT-116 180 bp overlap
ChIP HCT116 ENCFF929AYY 175 bp overlap
ChIP HEK293 ENCFF073DOT 214 bp overlap
ChIP HEK293 ENCFF073DOT 97 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 293 bp overlap
ChIP HL-60 ENCFF589LOF 223 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 308 bp overlap
ChIP HeLa-S3 ENCFF911DTC 161 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 278 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 307 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 284 bp overlap
ChIP HepG2 ENCFF122AWR 182 bp overlap
ChIP HepG2 ENCFF800JSL 165 bp overlap
ChIP Ishikawa ENCFF456OHV 227 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 320 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 323 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 298 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 218 bp overlap
ChIP K-562 GSE70482.REST.K-562 201 bp overlap
ChIP K562 ENCFF430APM 165 bp overlap
ChIP K562 ENCFF685YZN 323 bp overlap
ChIP K562 ENCFF688UKW 258 bp overlap
ChIP K562 ENCFF758CZL 323 bp overlap
ChIP MCF-7 ENCFF893RRD 205 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 319 bp overlap
ChIP NCI-H295R GSE49014.REST.NCI-H295R 296 bp overlap
ChIP NCI-H295R_SF1 GSE49014.REST.NCI-H295R_SF1 323 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 309 bp overlap
ChIP PANC-1 ENCSR000BUP.REST.PANC-1 211 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 126 bp overlap
ChIP PFSK-1 ENCFF668WMP 202 bp overlap
ChIP PFSK-1 ENCFF845VHA 169 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 288 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 162 bp overlap
ChIP Panc1 ENCFF518EEQ 306 bp overlap
ChIP Panc1 ENCFF629OJO 202 bp overlap
ChIP SK-N-SH ENCFF635KBN 126 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 151 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 323 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 323 bp overlap
ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 176 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 323 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 323 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 323 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 323 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 267 bp overlap
ChIP hiPSC_IIA11 GSE106870.REST.hiPSC_IIA11 233 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 233 bp overlap
ChIP liver ENCFF240FWT 216 bp overlap
ChIP liver ENCFF577AZT 185 bp overlap
ChIP liver ENCSR893QWP.REST.liver 292 bp overlap
ChIP liver ENCSR867WPH.REST.liver 224 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.REST.metastatic-neuroblastoma_SKNMM 168 bp overlap
ChIP neural ENCSR000BTV.REST.neural 155 bp overlap
RUNX1 1 dataset
ChIP MCF-10A GSE129314.RUNX1.MCF-10A 150 bp overlap
RUNX2 1 dataset
ChIP SaOS-2 GSE76937.RUNX2.SaOS-2 143 bp overlap
SCRT2 1 dataset
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 135 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 79 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 172 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 162 bp overlap
SMARCA4 11 datasets
ChIP A-549_AG15688 GSE132290.SMARCA4.A-549_AG15688 225 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 237 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 168 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.SMARCA4.MCF-7_ARID1A-KO 154 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 143 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 143 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 247 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 208 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 176 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 165 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 263 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 223 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 259 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 127 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 123 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 140 bp overlap
SMARCD3 1 dataset
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 169 bp overlap
SMC1 1 dataset
ChIP HMEC-1 GSE101921.SMC1.HMEC-1 134 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 152 bp overlap
SMC3 2 datasets
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 236 bp overlap
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 116 bp overlap
SNAI2 2 datasets
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 238 bp overlap
ChIP keratinocyte_SNAI2 GSE55421.SNAI2.keratinocyte_SNAI2 229 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 249 bp overlap
STAG2 1 dataset
ChIP HMEC-1 GSE101921.STAG2.HMEC-1 90 bp overlap
STAT3 2 datasets
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 118 bp overlap
ChIP SUM159PT GSE152203.STAT3.SUM159PT 204 bp overlap
TEAD1 4 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 204 bp overlap
ChIP adipocyte GSE140782.TEAD1.adipocyte 179 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 180 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 130 bp overlap
TEAD4 10 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 147 bp overlap
ChIP A549 ENCFF243FTL 208 bp overlap
ChIP H1 ENCFF778PAX 194 bp overlap
ChIP HUCCT1 GSE68296.TEAD4.HUCCT1 153 bp overlap
ChIP MDA-MB-231 GSE66081.TEAD4.MDA-MB-231 175 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 296 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 109 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 180 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 122 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 299 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 130 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 156 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 179 bp overlap
YAP1 2 datasets
ChIP MCF-10A GSE97972.YAP1.MCF-10A 139 bp overlap
ChIP MDA-MB-231 GSE66081.YAP1.MDA-MB-231 217 bp overlap
YY1AP1 1 dataset
ChIP MCF-10A_DOX GSE115787.YY1AP1.MCF-10A_DOX 323 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 156 bp overlap
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