chr1 : 215,484,026 – 215,484,610

584 bp 60 TFs 0 linked genes

This 584 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

60 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 193 bp overlap

ARNT 1 dataset

ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 431 bp overlap

ARNTL 1 dataset

ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 209 bp overlap

BRD4 2 datasets

ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 542 bp overlap

ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 584 bp overlap

CHD4 1 dataset

ChIP 501-mel GSE134848.CHD4.501-mel 108 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 468 bp overlap

CTCF 1 dataset

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 205 bp overlap

DUX4 1 dataset

Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap

E2F6 1 dataset

Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap

EP300 2 datasets

ChIP neural ENCSR843ZUP.EP300.neural 226 bp overlap

ChIP neural cell ENCFF442QNK 78 bp overlap

ESR1_Y537C 1 dataset

ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 85 bp overlap

ESRRA 2 datasets

ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 186 bp overlap

ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 94 bp overlap

ESRRG 1 dataset

ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 137 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

Elf5 2 datasets

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

FOXA1 3 datasets

ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 65 bp overlap

ChIP MCF-7 GSE81714.FOXA1.MCF-7 116 bp overlap

ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 91 bp overlap

FOXA2 1 dataset

ChIP BJ1-hTERT GSE90454.FOXA2.BJ1-hTERT 77 bp overlap

FOXL2 1 dataset

ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 138 bp overlap

GATA1::TAL1 1 dataset

Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

JUN 3 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 296 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 310 bp overlap

MED1 2 datasets

ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 271 bp overlap

ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 78 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap

MEIS2 1 dataset

Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap

MITF 2 datasets

ChIP 501-mel GSE61965.MITF.501-mel 179 bp overlap

ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 237 bp overlap

NANOG 2 datasets

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 113 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 275 bp overlap

NKX2-2 1 dataset

Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap

NKX2-5 1 dataset

Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap

NR3C1 2 datasets

ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 215 bp overlap

ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 61 bp overlap

ONECUT1 1 dataset

Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap

ONECUT3 1 dataset

Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap

PAX3 1 dataset

Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap

PBX1 1 dataset

Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap

PBX2 1 dataset

Motif DE_12h DE_12h-PBX2_MA1113.3 9 bp overlap

PRDM15 1 dataset

ChIP WTC11 ENCFF108TMF 401 bp overlap

PRDM9 1 dataset

Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap

Pax7 1 dataset

Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap

Prdm5 1 dataset

Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap

RAD21 3 datasets

ChIP HAP1 GSE152721.RAD21.HAP1 322 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 301 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 210 bp overlap

RBPJ 1 dataset

ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 286 bp overlap

REST 2 datasets

ChIP neural ENCSR000BTV.REST.neural 209 bp overlap

ChIP neural cell ENCFF882LXX 253 bp overlap

SMAD2-3 1 dataset

ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 105 bp overlap

SMARCA4 3 datasets

ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 201 bp overlap

ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 207 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 266 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 230 bp overlap

SOX10 1 dataset

ChIP 501-mel GSE61965.SOX10.501-mel 282 bp overlap

SOX2 1 dataset

ChIP HNSC GSE69479.SOX2.HNSC 63 bp overlap

SP5 1 dataset

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

SPIB 1 dataset

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

SUZ12 2 datasets

ChIP K-562 ENCSR000AUC.SUZ12.K-562 57 bp overlap

ChIP MCF-7 ENCFF739TYI 357 bp overlap

Spi1 1 dataset

Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap

Stat4 1 dataset

Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap

TCF12 1 dataset

ChIP SK-N-SH ENCFF147AHB 391 bp overlap

TEAD1 1 dataset

Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap

TEAD2 1 dataset

Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap

TEAD3 1 dataset

Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap

TEAD4 1 dataset

Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap

ZFP14 1 dataset

Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap

ZNF317 1 dataset

Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap

ZNF549 1 dataset

Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap

ZNF701 1 dataset

Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap