chr12 : 97,368,582 – 97,369,152
570 bp 67 TFs 0 linked genes
This 570 bp open chromatin element has no linked target genes and is bound by 67 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:97,363,582 – 97,374,152
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 7 datasets
ChIP LNCaP ERP003503.AR.LNCaP 199 bp overlap
ChIP LNCaP ERP001226.AR.LNCaP 135 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 212 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 170 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 159 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 165 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 117 bp overlap
BRD4 3 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 210 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 570 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 305 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 254 bp overlap
CTCF 80 datasets
ChIP Caco-2 ENCFF934QYS 141 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 97 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 159 bp overlap
ChIP FT282_EV GSE131931.CTCF.FT282_EV 118 bp overlap
ChIP GM23338 ENCFF772DML 141 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 60 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 149 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 125 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 207 bp overlap
ChIP HEC-1-B_FFRR-mutation GSE140868.CTCF.HEC-1-B_FFRR-mutation 62 bp overlap
ChIP HEC-1-B_RF-mutation GSE140868.CTCF.HEC-1-B_RF-mutation 152 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 177 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 158 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 116 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 120 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 96 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 101 bp overlap
ChIP HepG2 ENCFF348BUL 142 bp overlap
ChIP HepG2 ENCFF757EKU 127 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 131 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 116 bp overlap
ChIP LNCAP ENCFF700QXT 294 bp overlap
ChIP LNCaP ENCSR000DME.CTCF.LNCaP 85 bp overlap
ChIP LNCaP ENCSR000DMF.CTCF.LNCaP 111 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 124 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 124 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 149 bp overlap
ChIP MCF-7 ENCFF162GNE 171 bp overlap
ChIP MCF-7 ENCFF198DQX 85 bp overlap
ChIP MCF-7 ENCFF210JUZ 248 bp overlap
ChIP MCF-7 ENCFF414SZG 157 bp overlap
ChIP MCF-7 ENCFF424NQR 158 bp overlap
ChIP MCF-7 ENCFF494VXA 85 bp overlap
ChIP MCF-7 ENCFF954TUV 160 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 164 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 108 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 151 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 131 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 122 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 76 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 128 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 214 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 175 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 195 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 142 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 212 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 182 bp overlap
ChIP Panc1 ENCFF056JQX 224 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 136 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 190 bp overlap
ChIP RWPE2 ENCFF911IEE 399 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 226 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 176 bp overlap
ChIP T-47D ENCSR000BNO.CTCF.T-47D 117 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 118 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 118 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 270 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 196 bp overlap
ChIP T-47D_serum GSE120162.CTCF.T-47D_serum 155 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 170 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 135 bp overlap
ChIP body of pancreas ENCFF798MEO 193 bp overlap
ChIP endodermal cell ENCFF471YCZ 265 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 199 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 152 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 68 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 130 bp overlap
ChIP kidney ENCFF335EKK 125 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 83 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 146 bp overlap
ChIP pancreas_body ENCSR484DDO.CTCF.pancreas_body 146 bp overlap
ChIP thyroid gland ENCFF163TUI 252 bp overlap
ChIP thyroid gland ENCFF204HWS 226 bp overlap
ChIP thyroid gland ENCFF300RYK 259 bp overlap
ChIP thyroid gland ENCFF631QRY 288 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 193 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 198 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 189 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 197 bp overlap
ChIP thyroid-gland ENCSR744YJR.CTCF.thyroid-gland 148 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 71 bp overlap
ChIP BLaER1 ENCFF460KDD 218 bp overlap
ESR1 13 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 140 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 175 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 215 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 180 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 170 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 171 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 190 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 177 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 154 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 168 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 166 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 152 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 399 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 160 bp overlap
FOXA1 3 datasets
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 111 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 130 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 151 bp overlap
FOXH1 2 datasets
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
FOXJ2::ELF1 1 dataset
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 189 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 123 bp overlap
GATA6 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 402 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 289 bp overlap
GLIS3 1 dataset
Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 175 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 374 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 148 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 121 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PGR 2 datasets
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 174 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 182 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 314 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 179 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 21 datasets
ChIP GM12878 ENCFF101UQZ 126 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 111 bp overlap
ChIP H1 ENCFF698EWO 178 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 150 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 150 bp overlap
ChIP Hep-G2 ERP000209.RAD21.Hep-G2 177 bp overlap
ChIP HepG2 ENCFF360ZSW 152 bp overlap
ChIP HepG2 ENCFF906QIS 114 bp overlap
ChIP HepG2 ENCFF963UBJ 181 bp overlap
ChIP Ishikawa ENCFF570JVV 159 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 133 bp overlap
ChIP MCF-7 ENCFF694KOM 95 bp overlap
ChIP MCF-7 ENCFF724VCQ 72 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 248 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 136 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 189 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 170 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 155 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 133 bp overlap
ChIP T-47D_triptolide GSE111923.RAD21.T-47D_triptolide 289 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 120 bp overlap
RELA 1 dataset
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 144 bp overlap
REST 2 datasets
ChIP H1 ENCFF429RUE 245 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 205 bp overlap
RFX4 1 dataset
Motif DE_12h DE_12h-RFX4_MA0799.3 13 bp overlap
Rfx6 1 dataset
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
Rhox11 2 datasets
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
Motif DE_24h DE_24h-Rhox11_MA0629.2 9 bp overlap
SIX1 1 dataset
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
SKI 1 dataset
ChIP Hep-G2 ENCSR754MUD.SKI.Hep-G2 135 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 78 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 166 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 474 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 521 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 360 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 570 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 570 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 563 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 537 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 509 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 385 bp overlap
SMAD3 3 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 230 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 152 bp overlap
SMC1A 3 datasets
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 195 bp overlap
ChIP MCF-7 GSE76893.SMC1A.MCF-7 154 bp overlap
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 183 bp overlap
SMC3 2 datasets
ChIP Hep-G2 ENCSR000EDW.SMC3.Hep-G2 118 bp overlap
ChIP HepG2 ENCFF745UAV 174 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 234 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 165 bp overlap
SRF 1 dataset
Motif DE_12h DE_12h-SRF_MA0083.3 16 bp overlap
STAG1 5 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 219 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 218 bp overlap
ChIP HepG2 ENCFF843EBZ 124 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 159 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 168 bp overlap
STAT1::STAT2 1 dataset
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
STAT3 4 datasets
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 140 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 266 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 121 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 193 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
ZBTB2 2 datasets
ChIP GM12878 GSE97661.ZBTB2.GM12878 103 bp overlap
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 112 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZFX 2 datasets
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 387 bp overlap
ChIP MCF-7 GSE102616.ZFX.MCF-7 405 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZNF143 2 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
Motif DE_24h DE_24h-ZNF143_MA0088.2 16 bp overlap
ZNF354C 1 dataset
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
ZNF384 1 dataset
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF574 1 dataset
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
ZNF677 2 datasets
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Motif DE_24h DE_24h-ZNF677_MA2101.1 12 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
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