chr12 : 88,448,420 88,448,931
511 bp 67 TFs 0 linked genes
This 511 bp open chromatin element has no linked target genes and is bound by 67 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:88,443,420 – 88,453,931
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 4 datasets
ChIP LNCaP GSE80256.AR.LNCaP 185 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 155 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 190 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 107 bp overlap
ASCL1 1 dataset
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 292 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 511 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 410 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 466 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 486 bp overlap
BRD4 5 datasets
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 362 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 511 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 465 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 511 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 420 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 215 bp overlap
CTCF 1 dataset
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 98 bp overlap
EGR1 1 dataset
ChIP fibroblast_DOX-24h GSE134924.EGR1.fibroblast_DOX-24h 186 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 220 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 465 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 378 bp overlap
FOXA1 2 datasets
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 149 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 235 bp overlap
FOXA2 1 dataset
ChIP KerCT GSE90454.FOXA2.KerCT 400 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 183 bp overlap
ChIP DE DE-GATA4-2 365 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 374 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-2 284 bp overlap
ChIP foregut GSE117136.GATA6.foregut 307 bp overlap
GFI1B 2 datasets
ChIP HEK293 ENCFF264FBS 275 bp overlap
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 261 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 298 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 344 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 113 bp overlap
Isl1 1 dataset
Motif ES_0h ES_0h-Isl1_MA1608.2 7 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 121 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 511 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 434 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 330 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
NKX6-3 1 dataset
Motif ES_0h ES_0h-NKX6-3_MA1530.2 8 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 207 bp overlap
Nr2e3 1 dataset
Motif ES_0h ES_0h-Nr2e3_MA0164.2 6 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 233 bp overlap
Olig2 1 dataset
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 97 bp overlap
ChIP stomach ENCFF607ZPU 197 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 401 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 467 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 51 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 177 bp overlap
RBPJ 1 dataset
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 347 bp overlap
SIX2 5 datasets
ChIP HEK GSE73865.SIX2.HEK 359 bp overlap
ChIP HEK GSE73865.SIX2.HEK 85 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 257 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 313 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 123 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 284 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 263 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX12 1 dataset
Motif ES_0h ES_0h-SOX12_MA1561.2 10 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 490 bp overlap
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 156 bp overlap
SOX4 1 dataset
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 149 bp overlap
SPI1 1 dataset
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 186 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 245 bp overlap
Sox11 1 dataset
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TFAP4 1 dataset
Motif ES_0h ES_0h-TFAP4_MA0691.1 10 bp overlap
TP63 6 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 210 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 138 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 117 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 132 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 104 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 110 bp overlap
Tcf12 1 dataset
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
YY1 7 datasets
ChIP GM12891 ENCSR000BKJ.YY1.GM12891 113 bp overlap
ChIP H1 ENCFF524BTL 85 bp overlap
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 388 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 511 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 91 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 294 bp overlap
ChIP WA01 GSE39096.YY1.WA01 270 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 197 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 457 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 150 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 241 bp overlap
ZNF331 1 dataset
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 432 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 241 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 409 bp overlap
ZNF394 3 datasets
ChIP HEK293 ENCFF236OPX 299 bp overlap
ChIP HEK293 ENCFF236OPX 497 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 241 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 289 bp overlap
ZNF547 1 dataset
Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 138 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 149 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 307 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 356 bp overlap